STP_moire
Angie
2023-11-07
Load libraries and working directory
Moire run
#In practice, run the MCMC for much longer with multiple chains. A good starting point would be `1e4` burnin steps, followed by `1e4` samples and careful assessment of estimated parameter distributions. If you do not run the MCMC for long enough, you risk incorrect estimates because the MCMC may not have converged and adequately explored the parameter space.
#moire_data <- read.csv("C:/Users/User1/SynologyDrive/UCSF work/STP data/ParagonV4/moire_data.csv", header = T)
#dat <- moire::load_long_form_data(moire_data)
#burnin <- 5e3
#num_samples <- 1e4
#parallelly::availableCores() #16
#num_threads = 14
#If you're pretty confident everything is like a true positive, you could go pretty strong, maybe eps_pos_alpha=1, eps_pos_beta=1000. that would translate into like a prior belief of there being 1 false positive every 500 loci
#mcmc_results <- moire::run_mcmc(
# dat, is_missing = dat$is_missing,
# allow_relatedness = TRUE,
# verbose = T, burnin = burnin, samples_per_chain = num_samples,
# pt_chains = 40, pt_num_threads = num_threads, thin = 10, adapt_temp = TRUE,
# r_beta = 1, r_alpha = 1, eps_pos_alpha = 0.1, eps_pos_beta = 9.9, eps_neg_alpha = 0.1, #eps_neg_beta = 9.9)
#readr::write_rds(moire_results, file=file.path('moire_results.rds'))Chapter 4 - Post Moire exploration
MCMC diagnostics
Population coi estimates
coi, effective coi, within-host relatedness
Summary/raw distribution of coi, eff_coi, relatedness from moire
## sample_id post_coi_lower post_coi_med post_coi_upper
## 1 M03_HAM14-373-D0 1.000 1 1.000
## 2 M03_HAM14-399-D0 1.000 1 1.000
## 3 M03_HAM15-061-D0 1.000 1 1.000
## 4 M03_HAM15-075-D0 1.000 1 1.000
## 5 M03_HAM16-076-D0 1.000 1 2.000
## 6 M03_HAM16-084-D0 1.000 1 1.000
## 7 M03_HAM16-097-D0 1.000 1 1.000
## 8 M03_HAM16-116-D0 1.000 1 1.000
## 9 M03_HAM16-221-D0 1.000 1 1.000
## 10 M03_HT25082010-02 1.000 1 1.000
## 11 M04_HAM14-407-D0 1.000 1 1.000
## 12 M04_HAM16-058-D0 1.000 1 1.000
## 13 M04_HAM16-077-D0 1.000 1 1.000
## 14 M04_HAM16-126-D0 1.000 1 1.000
## 15 M04_HAM16-128-D0 1.000 1 1.000
## 16 M04_HAM16-134-D0 1.000 1 1.000
## 17 M04_HAM16-137-D0 1.000 1 1.000
## 18 M04_HAM16-286-D0 1.000 1 1.000
## 19 M04_HAM16-381-D0 4.000 4 5.000
## 20 M04_HAM16-383-D0 1.000 1 1.000
## 21 M04_HAM16-444-D0 1.000 1 1.000
## 22 M04_HT02032011-03 4.000 4 5.000
## 23 M04_HT06012013-07 1.000 1 1.000
## 24 M04_HT15032011-09 1.000 1 1.000
## 25 M04_HT17032010-01 1.000 1 1.000
## 26 M04_HT18032010-05 1.000 1 1.000
## 27 M04_HT19032010-10 1.000 1 1.000
## 28 M04_HT21012013-05 1.000 1 1.000
## 29 M04_HT22012013-12 1.000 1 1.000
## 30 M04_HT25022011-03 3.000 3 4.000
## 31 M05_HAM14-013-D0 3.000 3 4.000
## 32 M05_HAM14-014-D0 2.000 2 3.000
## 33 M05_HAM15-019-D0 1.000 1 1.000
## 34 M05_HAM16-132-D0 1.000 1 1.000
## 35 M05_HAM16-145-D0 1.000 1 1.000
## 36 M05_HAM16-149-D0 1.000 1 1.000
## 37 M05_HAM16-160-D0 1.000 1 1.000
## 38 M05_HAM16-168-D0 1.000 1 1.000
## 39 M05_HAM16-197-D0 1.000 1 1.000
## 40 M05_HAM16-233-D0 1.000 1 1.000
## 41 M05_HAM16-276-D0 1.000 1 1.000
## 42 M05_HAM16-292-D0 1.000 1 1.000
## 43 M05_HAM16-375-D0 2.000 2 2.000
## 44 M05_HAM16-424-D0 1.000 1 1.000
## 45 M05_HAM16-430-D0 1.000 1 1.000
## 46 M05_HAM16-496-D0 1.000 1 1.000
## 47 M06_HAM15-055-D0 3.000 3 4.000
## 48 M06_HAM15-106-D0 1.000 1 1.000
## 49 M06_HAM16-003-D0 1.000 1 1.000
## 50 M06_HAM16-010-D0 1.000 1 1.000
## 51 M06_HAM16-012-D0 2.000 3 3.000
## 52 M06_HAM16-013-D0 1.000 1 1.000
## 53 M06_HAM16-014-D0 1.000 1 1.000
## 54 M06_HAM16-019-D0 1.000 1 1.000
## 55 M06_HAM16-030-D0 1.000 1 1.000
## 56 M06_HAM16-039-D0 1.000 1 1.000
## 57 M06_HAM16-053-D0 1.000 1 1.000
## 58 M06_HAM16-054-D0 1.000 1 1.000
## 59 M06_HAM16-060-D0 1.000 1 1.000
## 60 M06_HAM16-064-D0 1.000 1 1.000
## 61 M06_HAM16-066-D0 1.000 1 1.000
## 62 M06_HAM16-067-D0 1.000 1 1.000
## 63 M06_HAM16-078-D0 1.000 1 1.000
## 64 M06_HAM16-082-D0 1.000 1 1.000
## 65 M06_HAM16-098-D0 1.000 1 1.000
## 66 M06_HAM16-101-D0 1.000 1 1.000
## 67 M06_HAM16-122-D0 1.000 1 1.000
## 68 M06_HAM16-127-D0 1.000 1 1.000
## 69 M06_HAM16-135-D0 1.000 1 1.000
## 70 M06_HAM16-179-D0 1.000 1 1.000
## 71 M06_HAM16-205-D0 1.000 1 1.000
## 72 M06_HAM16-246-D0 1.000 1 1.000
## 73 M06_HAM16-264-D0 1.000 1 1.000
## 74 M06_HAM16-313-D0 1.000 1 1.000
## 75 M06_HAM16-314-D0 1.000 1 1.000
## 76 M06_HAM16-325-D0 1.000 1 1.000
## 77 M06_HAM16-357-D0 1.000 1 1.000
## 78 M06_HAM16-364-D0 1.000 1 1.000
## 79 M06_HAM16-366-D0 1.000 1 1.000
## 80 M06_HAM16-396-D0 1.000 1 1.000
## 81 M06_HAM16-411-D0 1.000 1 1.000
## 82 M06_HAM16-419-D0 1.000 1 1.000
## 83 M06_HAM16-425-D0 1.000 1 1.000
## 84 M06_HAM16-426-D0 1.000 1 1.000
## 85 M06_HAM16-433-D0 1.000 1 1.000
## 86 M06_HAM16-469-D0 1.000 1 1.000
## 87 M06_HAM16-486-D0 1.000 1 1.000
## 88 M06_HAM16-487-D0 1.000 1 1.000
## 89 M06_HAM16-499-D0 1.000 1 1.000
## 90 M06_HAM16-500-D0 1.000 1 1.000
## 91 M06_HAM16-518-D0 1.000 1 1.000
## 92 M08_HAM14-004-D0 1.000 1 1.000
## 93 M08_HAM14-006-D0 1.000 1 1.000
## 94 M08_HAM14-007-D0 1.000 1 1.000
## 95 M08_HAM14-009-D0 1.000 1 1.000
## 96 M08_HAM14-019-D0 1.000 1 1.000
## 97 M08_HAM14-021-D0 1.000 1 1.000
## 98 M08_HAM14-024-D0 1.000 1 1.000
## 99 M08_HAM14-025-D0 1.000 1 1.000
## 100 M08_HAM15-004-D0 1.000 1 1.000
## 101 M08_HAM15-008-D0 1.000 1 1.000
## 102 M08_HAM15-011-D0 1.000 1 1.000
## 103 M08_HAM15-016-D0 1.000 1 1.000
## 104 M08_HAM15-112-D0 1.000 1 1.000
## 105 M08_HAM15-114-D0 1.000 1 1.000
## 106 M08_HAM15-115-D0 1.000 1 1.000
## 107 M08_HAM15-117-D0 1.000 1 1.000
## 108 M08_HAM15-119-D0 1.000 1 1.000
## 109 M08_HAM15-123-D0 1.000 1 1.000
## 110 M08_HAM15-129-D0 2.000 2 3.000
## 111 M08_HAM15-132-D0 1.000 1 1.000
## 112 M08_HAM15-137-D0 3.000 3 4.000
## 113 M08_HAM15-147-D0 1.000 1 1.000
## 114 M08_HAM15-208-D0 1.000 1 1.000
## 115 M08_HAM15-224-D0 1.000 1 1.000
## 116 M08_HAM15-229-D0 3.000 3 3.000
## 117 M08_HAM15-245-D0 1.000 1 1.000
## 118 M08_HAM15-248-D0 1.000 1 1.000
## 119 M08_HAM15-260-D0 1.000 1 1.000
## 120 M08_HAM15-278-D0 1.000 1 1.000
## 121 M08_HAM15-286-D0 3.000 3 3.000
## 122 M08_HAM15-293-D0 1.000 1 1.000
## 123 M08_HAM15-298-D0 1.000 1 1.000
## 124 M08_HAM15-301-D0 3.000 3 4.000
## 125 M08_HAM15-320-D0 1.000 1 1.000
## 126 M08_HAM15-327-D0 1.000 1 1.000
## 127 M08_HAM15-359-D0 1.000 1 1.000
## 128 M08_HAM15-379-D0 1.000 1 1.000
## 129 M08_HAM15-409-D0 1.000 1 1.000
## 130 M08_HAM15-410-D0 1.000 1 1.000
## 131 M08_HAM15-440-D0 1.000 1 1.000
## 132 M08_HAM15-450-D0 1.000 1 1.000
## 133 M08_HAM15-452-D0 1.000 1 1.000
## 134 M08_HAM15-462-D0 1.000 1 1.000
## 135 M08_HAM15-488-D0 1.000 1 1.000
## 136 M08_HAM15-489-D0 1.000 1 1.000
## 137 M08_HAM15-498-D0 1.000 1 1.000
## 138 M08_HAM15-503-D0 1.000 1 1.000
## 139 M08_HAM15-514-D0 1.000 1 1.000
## 140 M08_HAM15-551-D0 1.000 1 1.000
## 141 M08_HAM15-555-D0 1.000 1 1.000
## 142 M08_HAM15-558-D0 1.000 1 1.000
## 143 M08_HAM15-606-D0 1.000 1 1.000
## 144 M08_HAM15-630-D0 1.000 1 1.000
## 145 M08_HAM15-641-D0 1.000 1 1.000
## 146 M08_HAM15-645-D0 1.000 1 1.000
## 147 M08_HAM15-666-D0 1.000 1 1.000
## 148 M08_HAM16-080-D0 1.000 1 1.000
## 149 M08_HAM16-093-D0 1.000 1 1.000
## 150 M08_HAM16-107-D0 1.000 1 1.000
## 151 M08_HAM16-123-D0 1.000 1 1.000
## 152 M08_HAM16-156-D0 1.000 1 1.000
## 153 M08_HAM16-157-D0 1.000 1 1.000
## 154 M08_HAM16-171-D0 1.000 1 2.000
## 155 M08_HAM16-182-D0 1.000 1 1.000
## 156 M08_HAM16-201-D0 1.000 1 1.000
## 157 M08_HAM16-278-D0 1.000 1 1.000
## 158 M08_HAM16-279-D0 1.000 1 1.000
## 159 M08_HAM16-294-D0 1.000 1 1.000
## 160 M08_HAM16-295-D0 1.000 1 1.000
## 161 M08_HAM16-303-D0 1.000 1 1.000
## 162 M08_HAM16-309-D0 1.000 1 1.000
## 163 M08_HAM16-358-D0 1.000 1 1.000
## 164 M08_HAM16-373-D0 1.000 1 2.000
## 165 M08_HAM16-407-D0 1.000 1 1.000
## 166 M11_HT01062010-02 1.000 1 1.000
## 167 M11_HT03062010-03 1.000 1 1.000
## 168 M11_HT04092010-01 1.000 1 1.000
## 169 M11_HT07042010-03 1.000 1 1.000
## 170 M11_HT07052010-01 1.000 1 1.000
## 171 M11_HT08102010-02 1.000 1 1.000
## 172 M11_HT09042010-01 1.000 1 1.000
## 173 M11_HT09052010-01 1.000 1 1.000
## 174 M11_HT09052010-02 1.000 1 1.000
## 175 M11_HT09052010-05 2.000 2 3.000
## 176 M11_HT10062010-03 1.000 1 1.000
## 177 M11_HT11052010-10 1.000 1 1.000
## 178 M11_HT13042010-04 1.000 1 1.000
## 179 M11_HT13042010-05 1.000 1 1.000
## 180 M11_HT13072010-03 1.000 1 1.000
## 181 M11_HT15052010-03 1.000 1 1.000
## 182 M11_HT15092010-01 1.000 1 1.000
## 183 M11_HT16032010-08 1.000 1 1.000
## 184 M11_HT16042010-02 1.000 1 1.000
## 185 M11_HT17042010-01 1.000 1 1.000
## 186 M11_HT19032010-01 1.000 1 1.000
## 187 M11_HT19032010-03 1.000 1 1.000
## 188 M11_HT19032010-04 1.000 1 1.000
## 189 M11_HT21042010-06 1.000 1 1.000
## 190 M11_HT23032010-01 1.000 1 2.000
## 191 M11_HT23092011-02 1.000 1 1.000
## 192 M11_HT24042010-02 1.000 1 1.000
## 193 M11_HT24042010-04 1.000 1 1.000
## 194 M11_HT24092011-02 1.000 1 1.000
## 195 M11_HT26042010-01 1.000 1 1.000
## 196 M11_HT26092011-02 1.000 1 4.000
## 197 M11_HT27042010-04 1.000 1 1.000
## 198 M11_HT27042010-06 1.000 1 1.000
## 199 M11_HT27092010-01 1.000 1 1.000
## 200 M11_HT28032010-03 1.000 1 1.000
## 201 M11_HT28042010-01 1.000 1 1.000
## 202 M11_HT28092011-03 1.000 1 1.000
## 203 M11_HT30032010-01 1.000 1 1.000
## 204 M11_HT30042010-03 1.000 1 1.000
## 205 M11_HT30042010-06 1.000 1 1.000
## 206 M11_HT30042010-10 1.000 1 1.000
## 207 M12_HAM14-031-D0 1.000 1 1.000
## 208 M12_HAM14-114-D0 1.000 1 1.000
## 209 M12_HAM14-157-D0 1.000 1 1.000
## 210 M12_HAM14-269-D0 1.000 1 1.000
## 211 M12_HAM14-293-D0 1.000 1 1.000
## 212 M12_HAM14-424-D0 1.000 1 1.000
## 213 M12_HAM14-461-D0 1.000 1 1.000
## 214 M12_HAM14-499-D0 1.000 1 1.000
## 215 M12_HAM15-002-D0 1.000 1 1.000
## 216 M12_HAM15-039-D0 1.000 1 1.000
## 217 M12_HAM15-043-D0 1.000 1 1.000
## 218 M12_HAM15-063-D0 1.000 1 1.000
## 219 M12_HAM15-077-D0 1.000 1 1.000
## 220 M12_HAM15-128-D0 1.000 1 1.000
## 221 M12_HAM15-174-D0 1.000 1 1.000
## 222 M12_HAM15-180-D0 1.000 1 1.000
## 223 M12_HAM15-194-D0 1.000 1 1.000
## 224 M12_HAM15-219-D0 1.000 1 1.000
## 225 M12_HAM15-269-D0 1.000 1 1.000
## 226 M12_HAM15-276-D0 1.000 1 1.000
## 227 M12_HAM15-650-D0 1.000 1 1.000
## 228 M12_HAM16-004-D0 1.000 1 1.000
## 229 M12_HAM16-018-D0 1.000 1 1.000
## 230 M12_HAM16-050-D0 1.000 1 1.000
## 231 M12_HAM16-055-D0 1.000 1 1.000
## 232 M12_HAM16-056-D0 1.000 1 1.000
## 233 M12_HAM16-059-D0 1.000 1 1.000
## 234 M12_HAM16-099-D0 1.000 1 1.000
## 235 M12_HAM16-175-D0 1.000 1 1.000
## 236 M12_HAM16-195-D0 2.000 2 2.000
## 237 M12_HAM16-200-D0 1.000 1 1.000
## 238 M12_HAM16-249-D0 1.000 1 1.000
## 239 M12_HAM16-250-D0 1.000 1 1.000
## 240 M12_HAM16-252-D0 1.000 1 1.000
## 241 M12_HAM16-253-D0 1.000 1 1.000
## 242 M12_HAM16-258-D0 1.000 1 1.000
## 243 M12_HAM16-287-D0 1.000 1 1.000
## 244 M12_HAM16-298-D0 1.000 1 1.000
## 245 M12_HAM16-312-D0 1.000 1 1.000
## 246 M12_HAM16-322-D0 1.000 1 1.000
## 247 M12_HAM16-464-D0 1.000 1 1.000
## 248 M12_HAM16-485-D0 1.000 1 1.000
## 249 M12_HAM16-504-D0 1.000 2 3.000
## 250 M12_HAM16-513-D0 3.000 3 4.000
## 251 M12_HAM16-516-D0 1.000 1 1.000
## 252 M12_HT01072012-07 1.000 1 1.000
## 253 M12_HT01072012-24 1.000 1 1.000
## 254 M12_HT04012013-02 1.000 1 1.000
## 255 M12_HT05102012-01 1.000 1 1.000
## 256 M12_HT06012013-02 1.000 1 1.000
## 257 M12_HT08012013-02 1.000 1 1.000
## 258 M12_HT11112010-03 5.000 5 7.000
## 259 M12_HT12012013-01 1.000 1 1.000
## 260 M12_HT14022013-04 1.000 1 1.000
## 261 M12_HT15032013-02 1.000 1 1.000
## 262 M12_HT18012013-02 1.000 1 1.000
## 263 M12_HT19012011-03 1.000 1 1.000
## 264 M12_HT19072012-01 1.000 1 1.000
## 265 M12_HT22072012-01 1.000 1 1.000
## 266 M12_HT23112012-01 1.000 1 1.000
## 267 M12_HT24092011-01 1.000 1 1.000
## 268 M12_HT25042010-01 1.000 1 1.000
## 269 M12_HT26092011-01 1.000 1 1.000
## 270 M12_HT27092011-01 1.000 1 1.000
## 271 M12_HT28092010-01 1.000 1 1.000
## 272 M12_HT28092010-02 1.000 1 1.000
## 273 M12_HT29032010-01 1.000 1 1.000
## 274 M12_HT31072012-01 1.000 1 1.000
## 275 M14_HAM14-053-D0 1.000 1 1.000
## 276 M14_HAM14-056-D0 1.000 1 1.000
## 277 M14_HAM14-064-D0 1.000 1 1.000
## 278 M14_HAM14-068-D0 3.000 3 4.000
## 279 M14_HAM14-076-D0 1.000 1 1.000
## 280 M14_HAM14-079-D0 3.000 3 4.000
## 281 M14_HAM14-112-D0 3.000 4 5.000
## 282 M14_HAM14-127-D0 2.975 4 5.000
## 283 M14_HAM14-129-D0 1.000 1 1.000
## 284 M14_HAM14-143-D0 1.000 1 1.000
## 285 M14_HAM14-144-D0 1.000 1 1.000
## 286 M14_HAM14-268-D0 1.000 2 3.000
## 287 M14_HAM14-447-D0 1.000 1 1.000
## 288 M14_HAM15-111-D0 1.000 1 1.000
## 289 M14_HAM15-622-D0 1.000 1 1.000
## 290 M14_HAM16-068-D0 1.000 1 1.000
## 291 M14_HAM16-083-D0 1.000 1 1.000
## 292 M14_HAM16-110-D0 1.000 1 1.000
## 293 M14_HAM16-112-D0 1.000 1 1.000
## 294 M14_HAM16-167-D0 1.000 1 1.000
## 295 M14_HAM16-169-D0 1.000 1 1.000
## 296 M14_HAM16-185-D0 1.000 1 1.000
## 297 M14_HAM16-190-D0 1.000 1 1.000
## 298 M14_HT02062010-04 3.000 3 4.000
## 299 M14_HT03042011-01 1.000 1 1.000
## 300 M14_HT05012011-04 1.000 1 1.000
## 301 M14_HT06122010-01 1.000 1 1.000
## 302 M14_HT07042013-02 4.000 4 5.000
## 303 M14_HT08102010-03 1.000 1 1.000
## 304 M14_HT09032011-04 1.000 1 1.000
## 305 M14_HT10022012-01 1.000 1 1.000
## 306 M14_HT10022012-03 1.000 1 1.000
## 307 M14_HT12012011-01 1.000 1 1.000
## 308 M14_HT12032012-02 1.000 1 1.000
## 309 M14_HT13032013-01 1.000 1 1.000
## 310 M14_HT13072012-10 1.000 1 1.000
## 311 M14_HT15012011-01 1.000 1 1.000
## 312 M14_HT16042011-06 1.000 1 1.000
## 313 M14_HT17052012-08 1.000 1 1.000
## 314 M14_HT18042011-07 1.000 1 1.000
## 315 M14_HT19022012-01 1.000 1 1.000
## 316 M14_HT19022012-08 2.000 2 3.000
## 317 M14_HT19052012-14 1.000 1 1.000
## 318 M14_HT22012013-09 1.000 1 1.000
## 319 M14_HT23022012-02 1.000 1 1.000
## 320 M14_HT24042013-02 1.000 1 1.000
## 321 M14_HT28012011-01 1.000 1 1.000
## 322 M14_HT29012011-06 2.000 2 3.000
## 323 M14_HT29032012-02 4.000 4 5.000
## 324 M14_HT29062010-01 1.000 1 1.000
## 325 MH-02-AC_HAM15-000230 1.000 1 1.000
## 326 MH-02-AC_HAM15-000565 1.000 1 1.000
## 327 MH-02-AC_HAM15-000570 1.000 1 1.000
## 328 MH-02-AC_HAM15-000608 1.000 1 1.000
## 329 MH-02-AC_HAM15-000624 1.000 1 1.000
## 330 MH-02-AC_HAM15-000632 1.000 1 1.000
## 331 MH-02-AC_HAM15-000635 1.000 1 1.000
## 332 MH-02-AC_HAM15-000648 1.000 1 1.000
## 333 MH-02-AC_HAM15-000651 1.000 1 1.000
## 334 MH-02-AC_HAM15-000657 1.000 1 1.000
## 335 MH-02-AC_HAM15-000659 1.000 1 1.000
## 336 MH-02-AC_HAM15-000661 1.000 1 1.000
## 337 MH-02-AC_HAM15-000662 1.000 1 1.000
## 338 MH-02-AC_HAM15-000673 1.000 1 1.000
## 339 MH-02-AC_HAM15-000682 1.000 1 1.000
## 340 MH-02-AC_HAM15-000686 1.000 1 1.000
## 341 MH-02-AC_HAM15-000688 1.000 1 1.000
## 342 MH-02-AC_HAM15-000690 1.000 1 1.000
## 343 MH-02-AC_HAM15-000692 1.000 1 1.000
## 344 MH-02-AC_HAM15-000702 1.000 1 1.000
## 345 MH-02-AC_HAM15-000703 1.000 1 1.000
## 346 MH-02-AC_HAM15-000705 1.000 1 1.000
## 347 MH-02-AC_HAM15-000706 1.000 1 1.000
## 348 MH-02-AC_HAM15-000708 1.000 1 2.000
## 349 MH-02-AC_HAM15-000721 1.000 1 1.000
## 350 MH-02-AC_HAM15-000726 1.000 1 1.000
## 351 MH-02-AC_HAM15-000729 1.000 1 1.000
## 352 MH-02-AC_HAM15-000731 1.000 1 1.000
## 353 MH-02-AC_HAM15-000736 4.000 4 5.000
## 354 MH-02-AC_HAM15-000737 1.000 1 1.000
## 355 MH-02-AC_HAM15-000738 1.000 1 1.000
## 356 MH-02-AC_HAM15-000740 1.000 1 1.000
## 357 MH-02-AC_HAM15-000741 1.000 1 1.000
## 358 MH-02-AC_HAM15-000752 1.000 1 1.000
## 359 MH-02-AC_HAM15-000753 1.000 1 1.000
## 360 MH-02-AC_HAM15-000755 1.000 1 2.000
## 361 MH-02-AC_HAM15-000757 1.000 1 1.000
## 362 MH-02-AC_HAM15-000758 1.000 1 1.000
## 363 MH-02-AC_HAM15-000760 1.000 1 1.000
## 364 MH-02-AC_HAM15-000762 1.000 1 1.000
## 365 MH-02-AC_HAM15-000765 1.000 1 2.000
## 366 MH-02-AC_HAM15-000769 1.000 1 1.000
## 367 MH-02-AC_HAM15-000771 1.000 1 1.000
## 368 MH-02-AC_HAM15-000774 1.000 1 1.000
## 369 MH-02-AC_HAM15-000775 1.000 1 1.000
## 370 MH-02-AC_HAM15-000776 1.000 1 1.000
## 371 MH-02-AC_HAM15-000777 1.000 1 1.000
## 372 MH-02-AC_HAM15-000778 1.000 1 1.000
## 373 MH-02-AC_HAM15-000782 1.000 1 1.000
## 374 MH-02-AC_HAM15-000784 1.000 1 1.000
## 375 MH-03-AC_2005-123 1.000 1 2.000
## 376 MH-03-AC_2005-200 1.000 1 1.000
## 377 MH-03-AC_2005-203 4.000 4 5.000
## 378 MH-03-AC_2005-229 1.000 1 1.000
## 379 MH-03-AC_2005-271 1.000 1 1.000
## 380 MH-03-AC_HAM15-000136 1.000 1 1.000
## 381 MH-03-AC_HAM15-000163 1.000 1 1.000
## 382 MH-03-AC_HAM15-000173 1.000 2 3.000
## 383 MH-03-AC_HAM15-000189 1.000 1 1.000
## 384 MH-03-AC_HAM15-000265 1.000 1 1.000
## 385 MH-03-AC_HAM15-000375 1.000 1 1.000
## 386 MH-03-AC_HAM15-000381 1.000 1 2.000
## 387 MH-03-AC_HAM15-000396 1.000 1 1.000
## 388 MH-03-AC_HAM15-000414 1.000 1 1.000
## 389 MH-03-AC_HAM15-000419 1.000 1 2.000
## 390 MH-03-AC_HAM15-000483 1.000 1 2.000
## 391 MH-03-AC_HAM15-000518 1.000 1 2.000
## 392 MH-03-AC_HAM15-000548 2.000 2 3.000
## 393 MH-03-AC_HAM15-000572 1.000 1 1.000
## 394 MH-03-AC_HAM15-000593 1.000 1 1.000
## 395 MH-03-AC_HAM15-000612 1.000 1 1.000
## 396 MH-03-AC_HAM15-000634 1.000 1 1.000
## 397 MH-03-AC_HAM15-000637 1.000 1 2.000
## 398 MH-03-AC_HAM15-000658 1.000 1 2.000
## 399 MH-03-AC_HAM15-000660 1.000 1 1.000
## 400 MH-03-AC_HAM15-000668 1.000 1 1.000
## 401 MH-03-AC_HAM15-000680 1.000 1 1.000
## 402 MH-03-AC_HAM15-000683 1.000 1 1.000
## 403 MH-03-AC_HAM15-000689 2.000 2 3.000
## 404 MH-03-AC_HAM15-000693 1.000 1 1.000
## 405 MH-03-AC_HAM15-000694 1.000 1 1.000
## 406 MH-03-AC_HAM15-000698 3.000 4 5.000
## 407 MH-03-AC_HAM15-000710 2.000 2 4.000
## 408 MH-03-AC_HAM15-000711 1.000 1 2.000
## 409 MH-03-AC_HAM15-000713 3.000 3 4.000
## 410 MH-03-AC_HAM15-000716 1.000 1 3.000
## 411 MH-03-AC_HAM15-000717 1.000 1 2.000
## 412 MH-03-AC_HAM15-000719 1.000 1 2.000
## 413 MH-03-AC_HAM15-000728 1.000 1 1.000
## 414 MH-03-AC_HAM15-000733 1.000 1 1.000
## 415 MH-03-AC_HAM15-000751 1.000 1 1.000
## 416 MH-03-AC_HAM15-000759 1.000 1 1.000
## 417 MH-03-AC_HAM15-000770 1.000 1 1.000
## 418 MH-03-AC_HAM15-000781 3.000 3 4.000
## 419 MH-04-AC_HAM14-000067 1.000 1 1.000
## 420 MH-04-AC_HAM14-000075 1.000 1 1.000
## 421 MH-04-AC_HAM14-000103 1.000 1 2.000
## 422 MH-04-AC_HAM14-000145 1.000 2 3.000
## 423 MH-04-AC_HAM14-000169 1.000 1 1.000
## 424 MH-04-AC_HAM14-000193 4.000 4 6.000
## 425 MH-04-AC_HAM14-000200 4.000 4 6.000
## 426 MH-04-AC_HAM14-000204 1.000 1 2.000
## 427 MH-04-AC_HAM14-000206 1.000 3 4.000
## 428 MH-04-AC_HAM14-000210 1.000 1 1.000
## 429 MH-04-AC_HAM14-000213 2.000 3 4.000
## 430 MH-04-AC_HAM14-000220 1.000 1 1.000
## 431 MH-04-AC_HAM14-000228 1.000 1 2.000
## 432 MH-04-AC_HAM14-000260 4.000 4 6.000
## 433 MH-04-AC_HAM14-000261 3.000 3 4.000
## 434 MH-04-AC_HAM14-000263 1.000 1 1.000
## 435 MH-04-AC_HAM14-000272 1.000 1 1.000
## 436 MH-04-AC_HAM14-000298 4.000 4 6.000
## 437 MH-04-AC_HAM14-000303 1.000 1 2.000
## 438 MH-04-AC_HAM14-000310 1.000 1 1.000
## 439 MH-04-AC_HAM14-000316 1.000 1 1.000
## 440 MH-04-AC_HAM14-000324 1.000 1 1.000
## 441 MH-04-AC_HAM14-000328 1.000 1 1.000
## 442 MH-04-AC_HAM14-000336 1.000 1 1.000
## 443 MH-04-AC_HAM14-000352 1.000 1 1.000
## 444 MH-04-AC_HAM14-000355 1.000 1 1.000
## 445 MH-04-AC_HAM14-000390 1.000 1 1.000
## 446 MH-04-AC_HAM14-000391 1.000 1 2.000
## 447 MH-04-AC_HAM14-000408 1.000 1 1.000
## 448 MH-04-AC_HAM14-000417 4.000 4 5.000
## 449 MH-04-AC_HAM14-000421 1.000 1 1.000
## 450 MH-04-AC_HAM14-000428 1.000 1 1.000
## 451 MH-04-AC_HAM14-000455 1.000 1 1.000
## 452 MH-04-AC_HAM14-000456 1.000 1 1.000
## 453 MH-04-AC_HAM14-000478 1.000 1 3.000
## 454 MH-04-AC_HAM14-000484 3.000 3 4.000
## 455 MH-04-AC_HAM14-000488 1.000 1 1.000
## 456 MH-04-AC_HAM14-000501 1.000 1 1.000
## 457 MH-04-AC_HAM14-000503 1.000 1 2.000
## 458 MH-04-AC_HAM14-000510 1.000 1 1.000
## 459 MH-04-AC_HAM14-000512 1.000 1 1.000
## 460 MH-04-AC_HAM14-000513 1.000 1 1.000
## 461 MH-04-AC_HAM14-000515 1.000 1 1.000
## 462 MH-04-AC_HAM14-000519 1.000 1 2.000
## 463 MH-04-AC_HAM14-000520 1.000 1 1.000
## 464 MH-04-AC_HAM14-000521 1.000 1 1.000
## 465 MH-04-AC_HAM14-000522 1.000 1 2.000
## 466 MH-04-AC_HAM14-000526 1.000 1 2.000
## 467 MH-04-AC_HAM14-000530 1.000 1 2.000
## 468 MH-04-AC_HAM14-000531 1.000 1 1.000
## 469 MH-04-AC_HAM14-000532 3.000 4 5.000
## 470 MH-04-AC_HAM14-000533 4.000 4 6.000
## 471 MH-04-AC_HAM14-000541 1.000 1 1.000
## 472 MH-04-AC_HAM14-000542 1.000 1 1.000
## 473 MH-04-AC_HAM14-000544 1.000 1 1.000
## 474 MH-04-AC_HAM14-000548 1.000 1 1.000
## 475 MH-04-AC_HAM14-000552 1.000 2 3.000
## 476 MH-04-AC_HAM14-000553 1.000 1 1.000
## 477 MH-04-AC_HAM14-000555 1.000 1 1.000
## 478 MH-04-AC_HAM14-000556 1.000 1 1.000
## 479 MH-04-AC_HAM14-000558 4.000 4 5.000
## 480 MH-04-AC_HAM14-000559 2.000 2 2.000
## 481 MH-04-AC_HAM14-000560 1.000 1 1.000
## 482 MH-04-AC_HAM14-000565 1.000 1 2.000
## 483 MH-04-AC_HAM14-000569 1.000 1 1.000
## 484 MH-04-AC_HAM14-000572 1.000 1 2.000
## 485 MH-04-AC_HAM14-000574 1.000 1 1.000
## 486 MH-04-AC_HAM14-000575 1.000 1 1.000
## 487 MH-04-AC_HAM14-000579 1.000 1 2.000
## 488 MH-04-AC_HAM14-000586 1.000 1 1.000
## 489 MH-04-AC_HAM14-000588 1.000 1 1.000
## 490 MH-04-AC_HAM14-000589 1.000 1 1.000
## 491 MH-04-AC_HAM14-000590 1.000 1 1.000
## 492 MH-04-AC_HAM14-000594 1.000 1 1.000
## 493 MH-04-AC_HAM14-000597 1.000 1 1.000
## 494 MH-04-AC_HAM14-000599 1.000 1 2.000
## 495 MH-04-AC_HAM14-000603 1.000 1 1.000
## 496 MH-04-AC_HAM14-000604 1.000 1 1.000
## 497 MH-04-AC_HAM14-000606 1.000 1 1.000
## 498 MH-04-AC_HAM14-000609 1.000 1 1.000
## 499 MH-04-AC_HAM14-000610 1.000 1 1.000
## 500 MH-04-AC_HAM14-000612 1.000 1 1.000
## 501 MH-05-AC_HAM14-000042 1.000 1 1.000
## 502 MH-05-AC_HAM14-000065 1.000 1 1.000
## 503 MH-05-AC_HAM14-000094 1.000 1 1.000
## 504 MH-05-AC_HAM14-000096 1.000 1 1.000
## 505 MH-05-AC_HAM14-000130 4.000 4 5.000
## 506 MH-05-AC_HAM14-000236 3.000 3 4.000
## 507 MH-05-AC_HAM14-000281 2.000 3 4.000
## 508 MH-05-AC_HAM14-000451 1.000 1 1.000
## 509 MH-05-AC_HAM14-000468 1.000 1 1.000
## 510 MH-05-AC_HAM14-000469 1.000 1 1.000
## 511 MH-05-AC_HAM14-000529 1.000 1 1.000
## 512 MH-05-AC_HAM14-000534 3.000 3 4.000
## 513 MH-05-AC_HAM14-000537 1.000 1 1.000
## 514 MH-05-AC_HAM14-000540 1.000 1 1.000
## 515 MH-05-AC_HAM14-000547 1.000 1 1.000
## 516 MH-05-AC_HAM14-000557 1.000 1 1.000
## 517 MH-05-AC_HAM14-000578 1.000 1 1.000
## 518 MH-05-AC_HAM14-000580 1.000 1 1.000
## 519 MH-05-AC_HAM14-000591 1.000 1 1.000
## 520 MH-05-AC_HAM14-000605 1.000 1 1.000
## 521 MH-05-AC_HAM14-000607 1.000 1 1.000
## 522 MH-05-AC_HAM14-000608 1.000 1 1.000
## 523 MH-05-AC_HT02062013-7 1.000 1 1.000
## 524 MH-05-AC_HT03062013-27 1.000 1 1.000
## 525 MH-05-AC_HT03122013-1 1.000 1 1.000
## 526 MH-05-AC_HT06062013-15 1.000 1 1.000
## 527 MH-05-AC_HT07062013-8 1.000 1 1.000
## 528 MH-05-AC_HT09082013-1 1.000 1 1.000
## 529 MH-05-AC_HT10122013-1 1.000 1 1.000
## 530 MH-05-AC_HT11092013-1 1.000 1 1.000
## 531 MH-05-AC_HT11102013-1 1.000 1 1.000
## 532 MH-05-AC_HT11102013-2 1.000 1 1.000
## 533 MH-05-AC_HT11122013-1 1.000 1 1.000
## 534 MH-05-AC_HT13102013-1 1.000 1 1.000
## 535 MH-05-AC_HT14112013-2 1.000 1 1.000
## 536 MH-05-AC_HT17042013-11 4.000 4 5.000
## 537 MH-05-AC_HT20052013-12 1.000 1 1.000
## 538 MH-05-AC_HT20082013-2 1.000 1 1.000
## 539 MH-05-AC_HT23052013-4 4.000 4 5.000
## 540 MH-05-AC_HT25062013-2 1.000 1 1.000
## 541 MH-05-AC_HT27042013-2 2.000 3 4.000
## 542 MH-05-AC_HT28112013-2 1.000 1 1.000
## 543 MH-05-AC_HT28112013-4 1.000 1 1.000
## 544 MH-05-AC_HT30042013-1 1.000 1 1.000
## 545 MH-05-AC_HT30072013-3 1.000 1 1.000
## 546 MH-05-AC_HT31032013-3 1.000 1 1.000
## 547 MH-06-AC_HT01032013-9 1.000 1 1.000
## 548 MH-06-AC_HT01052013-1 1.000 1 1.000
## 549 MH-06-AC_HT01062013-18 2.000 2 3.000
## 550 MH-06-AC_HT01082013-2 1.000 1 1.000
## 551 MH-06-AC_HT01122013-1 1.000 1 1.000
## 552 MH-06-AC_HT01122013-2 1.000 1 1.000
## 553 MH-06-AC_HT02072013-8 1.000 1 1.000
## 554 MH-06-AC_HT02102013-3 1.000 1 1.000
## 555 MH-06-AC_HT03062013-14 2.000 2 3.000
## 556 MH-06-AC_HT03072013-1 1.000 1 1.000
## 557 MH-06-AC_HT03072013-5 1.000 1 1.000
## 558 MH-06-AC_HT03102013-1 1.000 1 1.000
## 559 MH-06-AC_HT04122013-3 1.000 1 1.000
## 560 MH-06-AC_HT05082013-3 1.000 1 1.000
## 561 MH-06-AC_HT06062013-4 2.000 2 3.000
## 562 MH-06-AC_HT06062013-9 2.000 2 3.000
## 563 MH-06-AC_HT06122013-1 3.000 3 4.000
## 564 MH-06-AC_HT07072013-2 1.000 1 1.000
## 565 MH-06-AC_HT07082013-2 1.000 1 1.000
## 566 MH-06-AC_HT07092013-2 1.000 1 1.000
## 567 MH-06-AC_HT07092013-3 1.000 1 1.000
## 568 MH-06-AC_HT07102013-1 1.000 1 1.000
## 569 MH-06-AC_HT09122013-1 1.000 1 1.000
## 570 MH-06-AC_HT10052013-5 3.000 3 4.000
## 571 MH-06-AC_HT10072013-2 1.000 1 1.000
## 572 MH-06-AC_HT12032013-1 1.000 1 1.000
## 573 MH-06-AC_HT12052013-5 1.000 1 1.000
## 574 MH-06-AC_HT12072013-7 1.000 1 1.000
## 575 MH-06-AC_HT14102013-1 2.000 2 3.000
## 576 MH-06-AC_HT14102013-3 1.000 1 1.000
## 577 MH-06-AC_HT14112013-3 1.000 1 3.000
## 578 MH-06-AC_HT15062013-7 1.000 1 1.000
## 579 MH-06-AC_HT15072013-3 1.000 1 1.000
## 580 MH-06-AC_HT15112013-1 2.000 2 3.000
## 581 MH-06-AC_HT16022013-1 1.000 1 1.000
## 582 MH-06-AC_HT16052013-17 1.000 1 1.000
## 583 MH-06-AC_HT16092013-4 1.000 1 1.000
## 584 MH-06-AC_HT16102013-1 1.000 1 1.000
## 585 MH-06-AC_HT17062013-7 1.000 1 1.000
## 586 MH-06-AC_HT18052013-3 1.000 1 1.000
## 587 MH-06-AC_HT18092013-1 3.000 3 4.000
## 588 MH-06-AC_HT18092013-2 1.000 1 1.000
## 589 MH-06-AC_HT19032013-7 1.000 1 1.000
## 590 MH-06-AC_HT19102013-3 1.000 1 1.000
## 591 MH-06-AC_HT20022013-1 2.000 2 2.000
## 592 MH-06-AC_HT20052013-13 1.000 1 1.000
## 593 MH-06-AC_HT20082013-3 1.000 1 1.000
## 594 MH-06-AC_HT20102013-2 1.000 1 1.000
## 595 MH-06-AC_HT21032013-2 2.000 3 4.000
## 596 MH-06-AC_HT21092013-1 1.000 1 1.000
## 597 MH-06-AC_HT22042013-17 1.000 1 1.000
## 598 MH-06-AC_HT23032013-3 1.000 1 2.000
## 599 MH-06-AC_HT23082013-2 1.000 1 1.000
## 600 MH-06-AC_HT23082013-5 1.000 1 1.000
## 601 MH-06-AC_HT24052013-2 1.000 1 1.000
## 602 MH-06-AC_HT25042013-6 1.000 1 1.000
## 603 MH-06-AC_HT25072013-1 1.000 1 1.000
## 604 MH-06-AC_HT26052013-2 1.000 1 1.000
## 605 MH-06-AC_HT26082013-1 3.000 3 4.000
## 606 MH-06-AC_HT26112013-4 1.000 1 1.000
## 607 MH-06-AC_HT26122013-1 3.000 3 3.000
## 608 MH-06-AC_HT29052013-4 1.000 1 1.000
## 609 MH-06-AC_HT30032013-1 1.000 1 1.000
## 610 MH-06-AC_HT31082013-2 1.000 1 1.000
## 611 MH-07-AC_HT02082013-2 1.000 1 1.000
## 612 MH-07-AC_HT02092013-1 1.000 1 1.000
## 613 MH-07-AC_HT02122013-1 4.000 4 5.000
## 614 MH-07-AC_HT02122013-2 1.000 1 1.000
## 615 MH-07-AC_HT03062013-11 2.000 2 3.000
## 616 MH-07-AC_HT03072013-2 1.000 1 1.000
## 617 MH-07-AC_HT04032013-8 1.000 1 2.000
## 618 MH-07-AC_HT04112013-2 1.000 1 1.000
## 619 MH-07-AC_HT04122013-2 3.000 3 4.000
## 620 MH-07-AC_HT05052013-3 1.000 1 1.000
## 621 MH-07-AC_HT05082013-5 1.000 1 1.000
## 622 MH-07-AC_HT06052013-9 1.000 1 1.000
## 623 MH-07-AC_HT06102013-1 1.000 1 1.000
## 624 MH-07-AC_HT09072013-4 3.000 3 4.000
## 625 MH-07-AC_HT09092013-2 3.000 3 3.000
## 626 MH-07-AC_HT09092013-4 1.000 1 1.000
## 627 MH-07-AC_HT10092013-1 3.000 3 4.000
## 628 MH-07-AC_HT10112013-4 1.000 1 1.000
## 629 MH-07-AC_HT11022013-8 1.000 1 1.000
## 630 MH-07-AC_HT11052013-5 1.000 1 1.000
## 631 MH-07-AC_HT11072013-3 1.000 2 2.000
## 632 MH-07-AC_HT11072013-4 1.000 1 1.000
## 633 MH-07-AC_HT12052013-16 3.000 3 4.000
## 634 MH-07-AC_HT12072013-1 1.000 1 1.000
## 635 MH-07-AC_HT13022013-5 1.000 1 1.000
## 636 MH-07-AC_HT13102013-2 1.000 1 1.000
## 637 MH-07-AC_HT13122013-1 1.000 1 1.000
## 638 MH-07-AC_HT14042013-3 1.000 1 2.000
## 639 MH-07-AC_HT14112013-7 1.000 1 1.000
## 640 MH-07-AC_HT14122013-1 1.000 1 1.000
## 641 MH-07-AC_HT14122013-2 1.000 1 1.000
## 642 MH-07-AC_HT15072013-2 1.000 1 1.000
## 643 MH-07-AC_HT15102013-2 1.000 1 1.000
## 644 MH-07-AC_HT15102013-5 3.000 3 4.000
## 645 MH-07-AC_HT16052013-14 1.000 1 1.000
## 646 MH-07-AC_HT16062013-12 4.000 4 5.000
## 647 MH-07-AC_HT16062013-17 1.000 1 1.000
## 648 MH-07-AC_HT16092013-1 1.000 1 1.000
## 649 MH-07-AC_HT16092013-3 1.000 1 1.000
## 650 MH-07-AC_HT17022013-5 1.000 1 1.000
## 651 MH-07-AC_HT17062013-1 1.000 1 1.000
## 652 MH-07-AC_HT17082013-1 1.000 1 1.000
## 653 MH-07-AC_HT18022013-1 1.000 1 1.000
## 654 MH-07-AC_HT18092013-3 1.000 1 1.000
## 655 MH-07-AC_HT19052013-1 1.000 1 1.000
## 656 MH-07-AC_HT19102013-1 1.000 1 1.000
## 657 MH-07-AC_HT19112013-4 1.000 1 1.000
## 658 MH-07-AC_HT20092013-1 1.000 1 1.000
## 659 MH-07-AC_HT20102013-1 1.000 1 1.000
## 660 MH-07-AC_HT21052013-7 1.000 1 1.000
## 661 MH-07-AC_HT21112013-1 3.000 3 4.000
## 662 MH-07-AC_HT21122013-1 1.000 1 1.000
## 663 MH-07-AC_HT22052013-4 1.000 1 1.000
## 664 MH-07-AC_HT22092013-2 1.000 1 1.000
## 665 MH-07-AC_HT22112013-1 1.000 1 1.000
## 666 MH-07-AC_HT23082013-1 1.000 1 1.000
## 667 MH-07-AC_HT23092013-1 1.000 1 1.000
## 668 MH-07-AC_HT24052013-1 1.000 1 1.000
## 669 MH-07-AC_HT24062013-12 1.000 1 1.000
## 670 MH-07-AC_HT24112013-1 1.000 1 1.000
## 671 MH-07-AC_HT26052013-7 1.000 1 1.000
## 672 MH-07-AC_HT26072013-3 1.000 1 1.000
## 673 MH-07-AC_HT26102013-1 1.000 1 1.000
## 674 MH-07-AC_HT29092013-3 3.000 3 4.000
## 675 MH-07-AC_HT30042013-10 1.000 1 1.000
## 676 MH-07-AC_HT30092013-1 1.000 1 1.000
## 677 MH-07-AC_HT31082013-1 1.000 1 2.000
## 678 MH-08-AC_HT01072012-11 1.000 1 1.000
## 679 MH-08-AC_HT01082012-3 1.000 1 1.000
## 680 MH-08-AC_HT01122012-6 1.000 1 1.000
## 681 MH-08-AC_HT02082012-1 1.000 1 1.000
## 682 MH-08-AC_HT02082012-2 1.000 1 1.000
## 683 MH-08-AC_HT03082012-3 1.000 1 1.000
## 684 MH-08-AC_HT04062012-11 1.000 1 1.000
## 685 MH-08-AC_HT04062012-2 1.000 1 1.000
## 686 MH-08-AC_HT04062012-7 1.000 1 1.000
## 687 MH-08-AC_HT04122012-2 1.000 1 1.000
## 688 MH-08-AC_HT04122012-8 1.000 1 1.000
## 689 MH-08-AC_HT05082012-1 1.000 1 1.000
## 690 MH-08-AC_HT06082012-2 3.000 3 3.000
## 691 MH-08-AC_HT06122012-1 1.000 1 1.000
## 692 MH-08-AC_HT06122012-2 1.000 1 1.000
## 693 MH-08-AC_HT07082012-1 1.000 1 1.000
## 694 MH-08-AC_HT07082012-3 3.000 4 5.000
## 695 MH-08-AC_HT07092012-1 1.000 1 1.000
## 696 MH-08-AC_HT09062012-12 1.000 1 1.000
## 697 MH-08-AC_HT09062012-19 1.000 1 1.000
## 698 MH-08-AC_HT09062012-6 1.000 1 1.000
## 699 MH-08-AC_HT10072012-2 4.000 4 5.000
## 700 MH-08-AC_HT10102012-1 1.000 1 1.000
## 701 MH-08-AC_HT11062012-26 2.000 2 3.000
## 702 MH-08-AC_HT11062012-6 3.000 3 4.000
## 703 MH-08-AC_HT11092012-1 1.000 1 1.000
## 704 MH-08-AC_HT11102012-1 1.000 1 1.000
## 705 MH-08-AC_HT11112012-2 1.000 1 1.000
## 706 MH-08-AC_HT12082012-1 1.000 1 1.000
## 707 MH-08-AC_HT12122012-3 1.000 1 1.000
## 708 MH-08-AC_HT12122012-5 1.000 1 1.000
## 709 MH-08-AC_HT13062012-2 4.000 4 5.000
## 710 MH-08-AC_HT13122012-3 1.000 1 1.000
## 711 MH-08-AC_HT14062012-7 1.000 1 1.000
## 712 MH-08-AC_HT14082012-1 4.000 4 5.000
## 713 MH-08-AC_HT14122012-4 1.000 1 1.000
## 714 MH-08-AC_HT15112012-2 1.000 1 1.000
## 715 MH-08-AC_HT15122012-1 1.000 1 1.000
## 716 MH-08-AC_HT15122012-4 1.000 1 1.000
## 717 MH-08-AC_HT16062012-12 1.000 1 1.000
## 718 MH-08-AC_HT16072012-8 1.000 1 1.000
## 719 MH-08-AC_HT16082012-4 1.000 1 1.000
## 720 MH-08-AC_HT16102012-3 4.000 4 5.000
## 721 MH-08-AC_HT17072012-11 1.000 1 1.000
## 722 MH-08-AC_HT17072012-19 3.000 3 4.000
## 723 MH-08-AC_HT17072012-2 1.000 1 1.000
## 724 MH-08-AC_HT17122012-2 1.000 1 1.000
## 725 MH-08-AC_HT17122012-3 1.000 1 1.000
## 726 MH-08-AC_HT18102012-2 1.000 1 1.000
## 727 MH-08-AC_HT18102012-3 1.000 1 1.000
## 728 MH-08-AC_HT20062012-26 1.000 1 1.000
## 729 MH-08-AC_HT20072012-5 1.000 1 1.000
## 730 MH-08-AC_HT20092012-1 1.000 1 1.000
## 731 MH-08-AC_HT20092012-2 1.000 1 1.000
## 732 MH-08-AC_HT20102012-1 1.000 1 1.000
## 733 MH-08-AC_HT20102012-2 1.000 1 1.000
## 734 MH-08-AC_HT20102012-3 1.000 2 3.000
## 735 MH-08-AC_HT20112012-8 1.000 1 1.000
## 736 MH-08-AC_HT21082012-1 1.000 1 1.000
## 737 MH-08-AC_HT21112012-2 1.000 1 1.000
## 738 MH-08-AC_HT21112012-3 1.000 1 1.000
## 739 MH-08-AC_HT22102012-2 1.000 1 3.000
## 740 MH-08-AC_HT22102012-5 1.000 1 1.000
## 741 MH-08-AC_HT22112012-3 1.000 1 1.000
## 742 MH-08-AC_HT22112012-7 1.000 1 1.000
## 743 MH-08-AC_HT22122012-4 1.000 1 1.000
## 744 MH-08-AC_HT23102012-3 1.000 1 3.000
## 745 MH-08-AC_HT23112012-3 1.000 1 1.000
## 746 MH-08-AC_HT25112012-1 1.000 1 1.000
## 747 MH-08-AC_HT25112012-6 1.000 1 1.000
## 748 MH-08-AC_HT26062012-4 1.000 1 1.000
## 749 MH-08-AC_HT26092012-2 1.000 1 1.000
## 750 MH-08-AC_HT26102012-1 1.000 1 1.000
## 751 MH-08-AC_HT26102012-4 1.000 1 1.000
## 752 MH-08-AC_HT26112012-4 1.000 1 1.000
## 753 MH-08-AC_HT26112012-7 1.000 1 1.000
## 754 MH-08-AC_HT27062012-5 1.000 1 1.000
## 755 MH-08-AC_HT27082012-2 1.000 1 1.000
## 756 MH-08-AC_HT28092012-3 1.000 1 1.000
## 757 MH-08-AC_HT28112012-4 1.000 1 1.000
## 758 MH-08-AC_HT29082012-2 3.000 3 3.000
## 759 MH-08-AC_HT29122012-4 1.000 1 1.000
## 760 MH-09-AC_HT01062012-10 1.000 1 1.000
## 761 MH-09-AC_HT01062012-2 1.000 1 1.000
## 762 MH-09-AC_HT01072011-6 1.000 1 1.000
## 763 MH-09-AC_HT01072011-7 1.000 1 1.000
## 764 MH-09-AC_HT01122011-13 1.000 1 1.000
## 765 MH-09-AC_HT02042012-4 1.000 1 1.000
## 766 MH-09-AC_HT02052012-4 1.000 1 1.000
## 767 MH-09-AC_HT02062011-14 1.000 1 1.000
## 768 MH-09-AC_HT02062011-8 1.000 1 1.000
## 769 MH-09-AC_HT02062012-10 1.000 1 1.000
## 770 MH-09-AC_HT02062012-25 1.000 1 1.000
## 771 MH-09-AC_HT03032012-6 1.000 1 1.000
## 772 MH-09-AC_HT03052012-2 1.000 1 1.000
## 773 MH-09-AC_HT03062011-12 1.000 1 1.000
## 774 MH-09-AC_HT04062011-6 1.000 1 1.000
## 775 MH-09-AC_HT04072011-1 1.000 1 1.000
## 776 MH-09-AC_HT04072011-6 1.000 1 1.000
## 777 MH-09-AC_HT04122012-4 1.000 1 1.000
## 778 MH-09-AC_HT05042012-2 1.000 1 1.000
## 779 MH-09-AC_HT05052012-2 1.000 1 1.000
## 780 MH-09-AC_HT05062011-1 3.000 3 4.000
## 781 MH-09-AC_HT05072011-4 1.000 1 1.000
## 782 MH-09-AC_HT06042012-3 1.000 1 1.000
## 783 MH-09-AC_HT06072011-1 1.000 1 1.000
## 784 MH-09-AC_HT07042012-1 1.000 1 1.000
## 785 MH-09-AC_HT07122011-12 1.000 1 1.000
## 786 MH-09-AC_HT07122011-2 1.000 1 1.000
## 787 MH-09-AC_HT07122011-7 1.000 1 1.000
## 788 MH-09-AC_HT08072011-2 1.000 1 1.000
## 789 MH-09-AC_HT08122011-6 4.000 4 5.000
## 790 MH-09-AC_HT10062011-2 1.000 1 1.000
## 791 MH-09-AC_HT10062011-4 1.000 1 1.000
## 792 MH-09-AC_HT11012012-9 1.000 1 1.000
## 793 MH-09-AC_HT11062011-7 1.000 1 1.000
## 794 MH-09-AC_HT11062011-8 1.000 1 1.000
## 795 MH-09-AC_HT11072011-1 2.000 2 2.000
## 796 MH-09-AC_HT11072011-3 1.000 1 1.000
## 797 MH-09-AC_HT12052012-11 1.000 1 1.000
## 798 MH-09-AC_HT13072011-4 1.000 1 1.000
## 799 MH-09-AC_HT13122011-10 1.000 1 1.000
## 800 MH-09-AC_HT14122012-7 1.000 2 3.000
## 801 MH-09-AC_HT15032012-4 1.000 1 1.000
## 802 MH-09-AC_HT15042012-2 1.000 1 1.000
## 803 MH-09-AC_HT15052012-13 1.000 1 1.000
## 804 MH-09-AC_HT15062011-12 1.000 1 1.000
## 805 MH-09-AC_HT15122011-1 1.000 1 1.000
## 806 MH-09-AC_HT15122011-3 1.000 1 1.000
## 807 MH-09-AC_HT16052012-7 1.000 1 1.000
## 808 MH-09-AC_HT16062011-1 1.000 1 1.000
## 809 MH-09-AC_HT16072011-2 1.000 1 1.000
## 810 MH-09-AC_HT16072011-3 1.000 1 1.000
## 811 MH-09-AC_HT16102012-2 1.000 1 1.000
## 812 MH-09-AC_HT17042012-1 1.000 1 1.000
## 813 MH-09-AC_HT18072011-2 1.000 1 1.000
## 814 MH-09-AC_HT18122011-5 2.000 2 3.000
## 815 MH-09-AC_HT19122011-5 4.000 4 5.000
## 816 MH-09-AC_HT20022012-9 4.000 4 5.000
## 817 MH-09-AC_HT21052010-4 1.000 1 1.000
## 818 MH-09-AC_HT21052010-8 1.000 1 1.000
## 819 MH-09-AC_HT22052012-10 1.000 1 1.000
## 820 MH-09-AC_HT22052012-16 1.000 1 1.000
## 821 MH-09-AC_HT22062011-1 1.000 1 1.000
## 822 MH-09-AC_HT23052012-14 1.000 1 1.000
## 823 MH-09-AC_HT23052012-5 1.000 1 1.000
## 824 MH-09-AC_HT23112012-2 1.000 1 1.000
## 825 MH-09-AC_HT24052012-7 4.000 4 5.000
## 826 MH-09-AC_HT25042012-4 1.000 1 1.000
## 827 MH-09-AC_HT25042012-6 1.000 1 1.000
## 828 MH-09-AC_HT26052012-1 1.000 1 1.000
## 829 MH-09-AC_HT26072011-2 1.000 1 1.000
## 830 MH-09-AC_HT26122011-2 2.975 3 4.000
## 831 MH-09-AC_HT26122011-4 1.000 1 1.000
## 832 MH-09-AC_HT27032012-5 1.000 1 1.000
## 833 MH-09-AC_HT27072011-1 1.000 1 1.000
## 834 MH-09-AC_HT29052012-16 1.000 1 1.000
## 835 MH-09-AC_HT29052012-6 1.000 1 1.000
## 836 MH-09-AC_HT29062011-4 1.000 1 1.000
## 837 MH-09-AC_HT30052011-1 1.000 1 1.000
## 838 MH-09-AC_HT30052011-6 2.000 2 3.000
## 839 MH-11-AC_HT01062010-3 1.000 1 1.000
## 840 MH-11-AC_HT02072010-1 2.000 2 3.000
## 841 MH-11-AC_HT03112010-3 1.000 1 1.000
## 842 MH-11-AC_HT04032011-3 1.000 1 2.000
## 843 MH-11-AC_HT04062010-4 1.000 1 1.000
## 844 MH-11-AC_HT05062010-2 1.000 1 1.000
## 845 MH-11-AC_HT07062010-1 1.000 1 1.000
## 846 MH-11-AC_HT08032011-3 1.000 1 2.000
## 847 MH-11-AC_HT08082010-1 1.000 1 1.000
## 848 MH-11-AC_HT08112010-1 1.000 1 1.000
## 849 MH-11-AC_HT08112010-3 1.000 1 1.000
## 850 MH-11-AC_HT09102010-1 1.000 1 1.000
## 851 MH-11-AC_HT10052010-8 1.000 1 1.000
## 852 MH-11-AC_HT10052011-9 2.000 2 3.000
## 853 MH-11-AC_HT10112010-2 6.000 7 9.000
## 854 MH-11-AC_HT11072010-1 1.000 1 1.000
## 855 MH-11-AC_HT11072010-3 1.000 1 1.000
## 856 MH-11-AC_HT11092010-1 2.000 2 3.000
## 857 MH-11-AC_HT11102010-5 1.000 1 2.000
## 858 MH-11-AC_HT13102010-4 1.000 1 1.000
## 859 MH-11-AC_HT14102010-2 4.000 4 5.000
## 860 MH-11-AC_HT15072010-3 1.000 1 1.000
## 861 MH-11-AC_HT16032010-7 1.000 1 1.000
## 862 MH-11-AC_HT16042011-10 1.000 1 1.000
## 863 MH-11-AC_HT17062010-1 1.000 1 1.000
## 864 MH-11-AC_HT19032010-5 1.000 1 1.000
## 865 MH-11-AC_HT19092010-1 1.000 1 1.000
## 866 MH-11-AC_HT20102010-5 1.000 1 2.000
## 867 MH-11-AC_HT21062010-4 1.000 1 1.000
## 868 MH-11-AC_HT28032010-4 1.000 1 1.000
## 869 MH-11-AC_HT28052010-2 1.000 1 1.000
## 870 MH-11-AC_HT28072010-2 1.000 1 1.000
## 871 MH-11-AC_HT28092010-3 1.000 1 2.000
## 872 MH-12-AC_HT01062010-1 1.000 1 1.000
## 873 MH-12-AC_HT02062010-5 1.000 1 1.000
## 874 MH-12-AC_HT03042011-3 1.000 1 1.000
## 875 MH-12-AC_HT04092010-3 1.000 1 1.000
## 876 MH-12-AC_HT04112010-1 1.000 1 1.000
## 877 MH-12-AC_HT05052010-2 1.000 1 1.000
## 878 MH-12-AC_HT05072010-1 1.000 1 1.000
## 879 MH-12-AC_HT05102010-1 1.000 1 1.000
## 880 MH-12-AC_HT05102010-3 2.000 2 2.000
## 881 MH-12-AC_HT06052011-7 1.000 1 1.000
## 882 MH-12-AC_HT06112010-1 4.000 4 4.000
## 883 MH-12-AC_HT08042011-6 1.000 1 1.000
## 884 MH-12-AC_HT09032011-6 1.000 1 1.000
## 885 MH-12-AC_HT10052010-10 1.000 1 1.000
## 886 MH-12-AC_HT10052010-11 1.000 1 1.000
## 887 MH-12-AC_HT10082010-1 2.000 3 4.000
## 888 MH-12-AC_HT11052011-4 3.000 3 4.000
## 889 MH-12-AC_HT11112010-2 1.000 1 1.000
## 890 MH-12-AC_HT13052011-5 1.000 1 1.000
## 891 MH-12-AC_HT13072010-4 1.000 1 1.000
## 892 MH-12-AC_HT13102010-3 1.000 1 1.000
## 893 MH-12-AC_HT14102010-1 1.000 1 1.000
## 894 MH-12-AC_HT14122010-4 1.000 1 1.000
## 895 MH-12-AC_HT15122010-2 1.000 1 1.000
## 896 MH-12-AC_HT16022011-1 2.000 4 5.000
## 897 MH-12-AC_HT16022011-3 2.000 3 4.000
## 898 MH-12-AC_HT16052011-5 1.000 1 1.000
## 899 MH-12-AC_HT17062010-2 1.000 1 1.000
## 900 MH-12-AC_HT18042011-10 1.000 1 1.000
## 901 MH-12-AC_HT18082010-1 1.000 1 1.000
## 902 MH-12-AC_HT18102010-3 1.000 1 1.000
## 903 MH-12-AC_HT19032011-1 1.000 1 1.000
## 904 MH-12-AC_HT20052011-1 1.000 1 1.000
## 905 MH-12-AC_HT20102010-2 1.000 1 1.000
## 906 MH-12-AC_HT22042011-2 1.000 1 1.000
## 907 MH-12-AC_HT22042011-3 1.000 1 1.000
## 908 MH-12-AC_HT22072010-1 1.000 1 1.000
## 909 MH-12-AC_HT22102010-1 1.000 1 1.000
## 910 MH-12-AC_HT22102010-2 1.000 1 1.000
## 911 MH-12-AC_HT22102010-3 1.000 1 1.000
## 912 MH-12-AC_HT23022011-1 1.000 1 1.000
## 913 MH-12-AC_HT23062010-1 1.000 1 1.000
## 914 MH-12-AC_HT23072010-1 1.000 1 1.000
## 915 MH-12-AC_HT23122010-1 1.000 1 1.000
## 916 MH-12-AC_HT24052011-5 1.000 1 1.000
## 917 MH-12-AC_HT24122010-2 1.000 1 1.000
## 918 MH-12-AC_HT25012011-1 1.000 1 1.000
## 919 MH-12-AC_HT25052011-5 1.000 1 1.000
## 920 MH-12-AC_HT25052011-6 1.000 1 1.000
## 921 MH-12-AC_HT26022011-1 1.000 1 1.000
## 922 MH-12-AC_HT26032010-7 1.000 1 1.000
## 923 MH-12-AC_HT26032011-1 1.000 1 1.000
## 924 MH-12-AC_HT26032011-5 4.000 4 5.000
## 925 MH-12-AC_HT27042011-5 1.000 1 1.000
## 926 MH-12-AC_HT27112010-3 1.000 1 1.000
## 927 MH-12-AC_HT28032010-1 1.000 1 1.000
## 928 MH-12-AC_HT28062010-2 1.000 1 1.000
## 929 MH-12-AC_HT28072010-1 1.000 1 1.000
## 930 MH-12-AC_HT29102010-1 1.000 1 1.000
## 931 MH-12-AC_HT29112010-2 1.000 1 1.000
## 932 MH-12-AC_HT30042010-8 1.000 1 1.000
## 933 MH-13-AC_HT02062011-1 1.000 1 1.000
## 934 MH-13-AC_HT02122010-1 1.000 1 1.000
## 935 MH-13-AC_HT03012011-3 1.000 2 3.000
## 936 MH-13-AC_HT03032011-1 1.000 1 1.000
## 937 MH-13-AC_HT03052012-4 1.000 1 2.000
## 938 MH-13-AC_HT03112012-2 1.000 1 1.000
## 939 MH-13-AC_HT04022011-7 1.000 1 1.000
## 940 MH-13-AC_HT04042011-7 5.000 6 7.000
## 941 MH-13-AC_HT05032011-4 1.000 2 3.000
## 942 MH-13-AC_HT05042011-1 1.000 2 3.000
## 943 MH-13-AC_HT06072011-2 3.000 4 5.025
## 944 MH-13-AC_HT06122011-3 1.000 1 1.000
## 945 MH-13-AC_HT08052011-5 1.000 1 2.000
## 946 MH-13-AC_HT08072011-5 1.000 1 2.000
## 947 MH-13-AC_HT08072011-6 1.000 1 1.000
## 948 MH-13-AC_HT08092012-1 1.000 1 2.000
## 949 MH-13-AC_HT08122010-1 1.000 1 1.000
## 950 MH-13-AC_HT08122012-1 1.000 1 1.000
## 951 MH-13-AC_HT11062010-3 1.000 1 1.000
## 952 MH-13-AC_HT11122012-3 3.000 3 4.000
## 953 MH-13-AC_HT12052011-8 4.000 4 5.000
## 954 MH-13-AC_HT12122010-1 1.000 1 1.000
## 955 MH-13-AC_HT14042011-5 2.000 2 3.000
## 956 MH-13-AC_HT14122012-9 1.000 1 2.000
## 957 MH-13-AC_HT15022011-2 3.000 4 5.000
## 958 MH-13-AC_HT15122011-11 1.000 1 1.000
## 959 MH-13-AC_HT15122011-9 1.000 1 1.000
## 960 MH-13-AC_HT16012011-1 1.000 1 1.000
## 961 MH-13-AC_HT16022011-2 1.000 1 1.000
## 962 MH-13-AC_HT16032011-3 1.000 1 1.000
## 963 MH-13-AC_HT16052011-1 1.000 2 3.000
## 964 MH-13-AC_HT16112010-1 1.000 1 2.000
## 965 MH-13-AC_HT16122011-3 1.000 1 1.000
## 966 MH-13-AC_HT17022011-2 1.000 1 1.000
## 967 MH-13-AC_HT17022011-3 1.000 1 3.000
## 968 MH-13-AC_HT17052011-4 1.000 1 2.000
## 969 MH-13-AC_HT17052011-5 1.000 1 1.000
## 970 MH-13-AC_HT18022011-1 1.000 1 1.000
## 971 MH-13-AC_HT18022011-4 1.000 1 1.000
## 972 MH-13-AC_HT19052012-7 1.000 1 1.000
## 973 MH-13-AC_HT19092012-1 1.000 1 1.000
## 974 MH-13-AC_HT20072012-9 1.000 1 2.000
## 975 MH-13-AC_HT20092012-3 1.000 1 1.000
## 976 MH-13-AC_HT21052010-6 1.000 1 1.000
## 977 MH-13-AC_HT22022011-1 1.000 1 1.000
## 978 MH-13-AC_HT22032011-2 1.000 1 1.000
## 979 MH-13-AC_HT22052012-22 1.000 1 1.000
## 980 MH-13-AC_HT26122010-2 1.000 2 3.000
## 981 MH-13-AC_HT28032011-1 1.000 1 2.000
## 982 MH-13-AC_HT28072011-2 1.000 1 1.000
## 983 MH-13-AC_HT28072012-3 1.000 1 1.000
## 984 MH-13-AC_HT29092010-2 1.000 1 1.000
## 985 MH-13-AC_HT30082010-2 1.000 1 1.000
## post_coi_mean naive_coi offset_naive_coi
## 1 1.001 1 1
## 2 1.000 2 1
## 3 1.000 1 1
## 4 1.000 2 1
## 5 1.168 3 2
## 6 1.001 1 1
## 7 1.001 1 1
## 8 1.003 1 1
## 9 1.000 1 1
## 10 1.002 1 1
## 11 1.000 1 1
## 12 1.005 1 1
## 13 1.000 1 1
## 14 1.002 1 1
## 15 1.002 1 1
## 16 1.000 2 1
## 17 1.000 1 1
## 18 1.001 1 1
## 19 4.170 4 3
## 20 1.000 1 1
## 21 1.000 1 1
## 22 4.039 4 3
## 23 1.002 1 1
## 24 1.000 2 1
## 25 1.000 1 1
## 26 1.000 2 1
## 27 1.000 2 1
## 28 1.004 1 1
## 29 1.002 1 1
## 30 3.202 3 3
## 31 3.206 3 3
## 32 2.062 2 2
## 33 1.000 2 2
## 34 1.000 1 1
## 35 1.004 1 1
## 36 1.003 1 1
## 37 1.003 1 1
## 38 1.000 1 1
## 39 1.003 1 1
## 40 1.000 1 1
## 41 1.001 1 1
## 42 1.005 1 1
## 43 2.000 3 3
## 44 1.001 1 1
## 45 1.002 1 1
## 46 1.000 2 1
## 47 3.122 3 3
## 48 1.000 1 1
## 49 1.003 1 1
## 50 1.002 1 1
## 51 2.764 3 3
## 52 1.005 1 1
## 53 1.003 1 1
## 54 1.003 1 1
## 55 1.000 1 1
## 56 1.000 1 1
## 57 1.001 1 1
## 58 1.000 1 1
## 59 1.002 1 1
## 60 1.004 1 1
## 61 1.000 1 1
## 62 1.000 1 1
## 63 1.003 1 1
## 64 1.001 1 1
## 65 1.000 1 1
## 66 1.005 1 1
## 67 1.002 1 1
## 68 1.001 1 1
## 69 1.000 1 1
## 70 1.002 1 1
## 71 1.002 1 1
## 72 1.001 1 1
## 73 1.000 1 1
## 74 1.005 1 1
## 75 1.005 1 1
## 76 1.002 1 1
## 77 1.000 1 1
## 78 1.001 1 1
## 79 1.002 1 1
## 80 1.003 1 1
## 81 1.000 1 1
## 82 1.002 1 1
## 83 1.001 1 1
## 84 1.005 1 1
## 85 1.000 2 1
## 86 1.000 1 1
## 87 1.003 1 1
## 88 1.003 1 1
## 89 1.005 1 1
## 90 1.002 1 1
## 91 1.005 1 1
## 92 1.000 1 1
## 93 1.000 1 1
## 94 1.001 1 1
## 95 1.000 1 1
## 96 1.000 1 1
## 97 1.000 1 1
## 98 1.000 1 1
## 99 1.002 1 1
## 100 1.000 1 1
## 101 1.000 1 1
## 102 1.001 1 1
## 103 1.003 1 1
## 104 1.000 1 1
## 105 1.003 1 1
## 106 1.002 1 1
## 107 1.000 1 1
## 108 1.001 1 1
## 109 1.000 1 1
## 110 2.080 2 2
## 111 1.000 1 1
## 112 3.213 3 3
## 113 1.000 1 1
## 114 1.000 1 1
## 115 1.000 1 1
## 116 3.012 3 3
## 117 1.005 1 1
## 118 1.002 1 1
## 119 1.003 1 1
## 120 1.000 1 1
## 121 3.012 3 3
## 122 1.004 1 1
## 123 1.001 1 1
## 124 3.187 3 3
## 125 1.002 1 1
## 126 1.002 1 1
## 127 1.001 1 1
## 128 1.004 1 1
## 129 1.000 1 1
## 130 1.000 1 1
## 131 1.001 1 1
## 132 1.006 1 1
## 133 1.003 1 1
## 134 1.002 1 1
## 135 1.000 1 1
## 136 1.001 1 1
## 137 1.001 1 1
## 138 1.000 1 1
## 139 1.000 1 1
## 140 1.000 1 1
## 141 1.000 1 1
## 142 1.002 1 1
## 143 1.000 3 3
## 144 1.001 1 1
## 145 1.003 1 1
## 146 1.000 1 1
## 147 1.002 1 1
## 148 1.002 1 1
## 149 1.000 1 1
## 150 1.001 1 1
## 151 1.007 1 1
## 152 1.007 1 1
## 153 1.000 1 1
## 154 1.120 2 1
## 155 1.002 1 1
## 156 1.004 1 1
## 157 1.001 1 1
## 158 1.004 1 1
## 159 1.000 2 1
## 160 1.005 1 1
## 161 1.003 1 1
## 162 1.001 1 1
## 163 1.000 1 1
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## 984 1.000 2 2
## 985 1.000 2 2## sample_id post_effective_coi_lower post_effective_coi_med
## 1 M03_HAM14-373-D0 1.000000 1.000000
## 2 M03_HAM14-399-D0 1.000000 1.000000
## 3 M03_HAM15-061-D0 1.000000 1.000000
## 4 M03_HAM15-075-D0 1.000000 1.000000
## 5 M03_HAM16-076-D0 1.000000 1.000000
## 6 M03_HAM16-084-D0 1.000000 1.000000
## 7 M03_HAM16-097-D0 1.000000 1.000000
## 8 M03_HAM16-116-D0 1.000000 1.000000
## 9 M03_HAM16-221-D0 1.000000 1.000000
## 10 M03_HT25082010-02 1.000000 1.000000
## 11 M04_HAM14-407-D0 1.000000 1.000000
## 12 M04_HAM16-058-D0 1.000000 1.000000
## 13 M04_HAM16-077-D0 1.000000 1.000000
## 14 M04_HAM16-126-D0 1.000000 1.000000
## 15 M04_HAM16-128-D0 1.000000 1.000000
## 16 M04_HAM16-134-D0 1.000000 1.000000
## 17 M04_HAM16-137-D0 1.000000 1.000000
## 18 M04_HAM16-286-D0 1.000000 1.000000
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## 765 MH-09-AC_HT02042012-4 1.000000 1.000000
## 766 MH-09-AC_HT02052012-4 1.000000 1.000000
## 767 MH-09-AC_HT02062011-14 1.000000 1.000000
## 768 MH-09-AC_HT02062011-8 1.000000 1.000000
## 769 MH-09-AC_HT02062012-10 1.000000 1.000000
## 770 MH-09-AC_HT02062012-25 1.000000 1.000000
## 771 MH-09-AC_HT03032012-6 1.000000 1.000000
## 772 MH-09-AC_HT03052012-2 1.000000 1.000000
## 773 MH-09-AC_HT03062011-12 1.000000 1.000000
## 774 MH-09-AC_HT04062011-6 1.000000 1.000000
## 775 MH-09-AC_HT04072011-1 1.000000 1.000000
## 776 MH-09-AC_HT04072011-6 1.000000 1.000000
## 777 MH-09-AC_HT04122012-4 1.000000 1.000000
## 778 MH-09-AC_HT05042012-2 1.000000 1.000000
## 779 MH-09-AC_HT05052012-2 1.000000 1.000000
## 780 MH-09-AC_HT05062011-1 1.115716 1.190419
## 781 MH-09-AC_HT05072011-4 1.000000 1.000000
## 782 MH-09-AC_HT06042012-3 1.000000 1.000000
## 783 MH-09-AC_HT06072011-1 1.000000 1.000000
## 784 MH-09-AC_HT07042012-1 1.000000 1.000000
## 785 MH-09-AC_HT07122011-12 1.000000 1.000000
## 786 MH-09-AC_HT07122011-2 1.000000 1.000000
## 787 MH-09-AC_HT07122011-7 1.000000 1.000000
## 788 MH-09-AC_HT08072011-2 1.000000 1.000000
## 789 MH-09-AC_HT08122011-6 1.430154 1.569299
## 790 MH-09-AC_HT10062011-2 1.000000 1.000000
## 791 MH-09-AC_HT10062011-4 1.000000 1.000000
## 792 MH-09-AC_HT11012012-9 1.000000 1.000000
## 793 MH-09-AC_HT11062011-7 1.000000 1.000000
## 794 MH-09-AC_HT11062011-8 1.000000 1.000000
## 795 MH-09-AC_HT11072011-1 1.446732 1.548649
## 796 MH-09-AC_HT11072011-3 1.000000 1.000000
## 797 MH-09-AC_HT12052012-11 1.000000 1.000000
## 798 MH-09-AC_HT13072011-4 1.000000 1.000000
## 799 MH-09-AC_HT13122011-10 1.000000 1.000000
## 800 MH-09-AC_HT14122012-7 1.000000 1.025959
## 801 MH-09-AC_HT15032012-4 1.000000 1.000000
## 802 MH-09-AC_HT15042012-2 1.000000 1.000000
## 803 MH-09-AC_HT15052012-13 1.000000 1.000000
## 804 MH-09-AC_HT15062011-12 1.000000 1.000000
## 805 MH-09-AC_HT15122011-1 1.000000 1.000000
## 806 MH-09-AC_HT15122011-3 1.000000 1.000000
## 807 MH-09-AC_HT16052012-7 1.000000 1.000000
## 808 MH-09-AC_HT16062011-1 1.000000 1.000000
## 809 MH-09-AC_HT16072011-2 1.000000 1.000000
## 810 MH-09-AC_HT16072011-3 1.000000 1.000000
## 811 MH-09-AC_HT16102012-2 1.000000 1.000000
## 812 MH-09-AC_HT17042012-1 1.000000 1.000000
## 813 MH-09-AC_HT18072011-2 1.000000 1.000000
## 814 MH-09-AC_HT18122011-5 1.115851 1.188044
## 815 MH-09-AC_HT19122011-5 1.447972 1.603156
## 816 MH-09-AC_HT20022012-9 2.269733 2.484642
## 817 MH-09-AC_HT21052010-4 1.000000 1.000000
## 818 MH-09-AC_HT21052010-8 1.000000 1.000000
## 819 MH-09-AC_HT22052012-10 1.000000 1.000000
## 820 MH-09-AC_HT22052012-16 1.000000 1.000000
## 821 MH-09-AC_HT22062011-1 1.000000 1.000000
## 822 MH-09-AC_HT23052012-14 1.000000 1.000000
## 823 MH-09-AC_HT23052012-5 1.000000 1.000000
## 824 MH-09-AC_HT23112012-2 1.000000 1.000000
## 825 MH-09-AC_HT24052012-7 2.045539 2.231367
## 826 MH-09-AC_HT25042012-4 1.000000 1.000000
## 827 MH-09-AC_HT25042012-6 1.000000 1.000000
## 828 MH-09-AC_HT26052012-1 1.000000 1.000000
## 829 MH-09-AC_HT26072011-2 1.000000 1.000000
## 830 MH-09-AC_HT26122011-2 1.175867 1.270646
## 831 MH-09-AC_HT26122011-4 1.000000 1.000000
## 832 MH-09-AC_HT27032012-5 1.000000 1.000000
## 833 MH-09-AC_HT27072011-1 1.000000 1.000000
## 834 MH-09-AC_HT29052012-16 1.000000 1.000000
## 835 MH-09-AC_HT29052012-6 1.000000 1.000000
## 836 MH-09-AC_HT29062011-4 1.000000 1.000000
## 837 MH-09-AC_HT30052011-1 1.000000 1.000000
## 838 MH-09-AC_HT30052011-6 1.049833 1.105602
## 839 MH-11-AC_HT01062010-3 1.000000 1.000000
## 840 MH-11-AC_HT02072010-1 1.731880 1.886503
## 841 MH-11-AC_HT03112010-3 1.000000 1.000000
## 842 MH-11-AC_HT04032011-3 1.000000 1.000000
## 843 MH-11-AC_HT04062010-4 1.000000 1.000000
## 844 MH-11-AC_HT05062010-2 1.000000 1.000000
## 845 MH-11-AC_HT07062010-1 1.000000 1.000000
## 846 MH-11-AC_HT08032011-3 1.000000 1.000000
## 847 MH-11-AC_HT08082010-1 1.000000 1.000000
## 848 MH-11-AC_HT08112010-1 1.000000 1.000000
## 849 MH-11-AC_HT08112010-3 1.000000 1.000000
## 850 MH-11-AC_HT09102010-1 1.000000 1.000000
## 851 MH-11-AC_HT10052010-8 1.000000 1.000000
## 852 MH-11-AC_HT10052011-9 1.025823 1.066838
## 853 MH-11-AC_HT10112010-2 4.805823 5.265128
## 854 MH-11-AC_HT11072010-1 1.000000 1.000000
## 855 MH-11-AC_HT11072010-3 1.000000 1.000000
## 856 MH-11-AC_HT11092010-1 1.019367 1.058471
## 857 MH-11-AC_HT11102010-5 1.000000 1.000000
## 858 MH-11-AC_HT13102010-4 1.000000 1.000000
## 859 MH-11-AC_HT14102010-2 2.210188 2.411207
## 860 MH-11-AC_HT15072010-3 1.000000 1.000000
## 861 MH-11-AC_HT16032010-7 1.000000 1.000000
## 862 MH-11-AC_HT16042011-10 1.000000 1.000000
## 863 MH-11-AC_HT17062010-1 1.000000 1.000000
## 864 MH-11-AC_HT19032010-5 1.000000 1.000000
## 865 MH-11-AC_HT19092010-1 1.000000 1.000000
## 866 MH-11-AC_HT20102010-5 1.000000 1.000000
## 867 MH-11-AC_HT21062010-4 1.000000 1.000000
## 868 MH-11-AC_HT28032010-4 1.000000 1.000000
## 869 MH-11-AC_HT28052010-2 1.000000 1.000000
## 870 MH-11-AC_HT28072010-2 1.000000 1.000000
## 871 MH-11-AC_HT28092010-3 1.000000 1.000000
## 872 MH-12-AC_HT01062010-1 1.000000 1.000000
## 873 MH-12-AC_HT02062010-5 1.000000 1.000000
## 874 MH-12-AC_HT03042011-3 1.000000 1.000000
## 875 MH-12-AC_HT04092010-3 1.000000 1.000000
## 876 MH-12-AC_HT04112010-1 1.000000 1.000000
## 877 MH-12-AC_HT05052010-2 1.000000 1.000000
## 878 MH-12-AC_HT05072010-1 1.000000 1.000000
## 879 MH-12-AC_HT05102010-1 1.000000 1.000000
## 880 MH-12-AC_HT05102010-3 1.494798 1.602725
## 881 MH-12-AC_HT06052011-7 1.000000 1.000000
## 882 MH-12-AC_HT06112010-1 2.447266 2.663392
## 883 MH-12-AC_HT08042011-6 1.000000 1.000000
## 884 MH-12-AC_HT09032011-6 1.000000 1.000000
## 885 MH-12-AC_HT10052010-10 1.000000 1.000000
## 886 MH-12-AC_HT10052010-11 1.000000 1.000000
## 887 MH-12-AC_HT10082010-1 1.200016 1.287582
## 888 MH-12-AC_HT11052011-4 1.339109 1.465269
## 889 MH-12-AC_HT11112010-2 1.000000 1.000000
## 890 MH-12-AC_HT13052011-5 1.000000 1.000000
## 891 MH-12-AC_HT13072010-4 1.000000 1.000000
## 892 MH-12-AC_HT13102010-3 1.000000 1.000000
## 893 MH-12-AC_HT14102010-1 1.000000 1.000000
## 894 MH-12-AC_HT14122010-4 1.000000 1.000000
## 895 MH-12-AC_HT15122010-2 1.000000 1.000000
## 896 MH-12-AC_HT16022011-1 1.421132 1.556999
## 897 MH-12-AC_HT16022011-3 1.413438 1.539141
## 898 MH-12-AC_HT16052011-5 1.000000 1.000000
## 899 MH-12-AC_HT17062010-2 1.000000 1.000000
## 900 MH-12-AC_HT18042011-10 1.000000 1.000000
## 901 MH-12-AC_HT18082010-1 1.000000 1.000000
## 902 MH-12-AC_HT18102010-3 1.000000 1.000000
## 903 MH-12-AC_HT19032011-1 1.000000 1.000000
## 904 MH-12-AC_HT20052011-1 1.000000 1.000000
## 905 MH-12-AC_HT20102010-2 1.000000 1.000000
## 906 MH-12-AC_HT22042011-2 1.000000 1.000000
## 907 MH-12-AC_HT22042011-3 1.000000 1.000000
## 908 MH-12-AC_HT22072010-1 1.000000 1.000000
## 909 MH-12-AC_HT22102010-1 1.000000 1.000000
## 910 MH-12-AC_HT22102010-2 1.000000 1.000000
## 911 MH-12-AC_HT22102010-3 1.000000 1.000000
## 912 MH-12-AC_HT23022011-1 1.000000 1.000000
## 913 MH-12-AC_HT23062010-1 1.000000 1.000000
## 914 MH-12-AC_HT23072010-1 1.000000 1.000000
## 915 MH-12-AC_HT23122010-1 1.000000 1.000000
## 916 MH-12-AC_HT24052011-5 1.000000 1.000000
## 917 MH-12-AC_HT24122010-2 1.000000 1.000000
## 918 MH-12-AC_HT25012011-1 1.000000 1.000000
## 919 MH-12-AC_HT25052011-5 1.000000 1.000000
## 920 MH-12-AC_HT25052011-6 1.000000 1.000000
## 921 MH-12-AC_HT26022011-1 1.000000 1.000000
## 922 MH-12-AC_HT26032010-7 1.000000 1.000000
## 923 MH-12-AC_HT26032011-1 1.000000 1.000000
## 924 MH-12-AC_HT26032011-5 1.674341 1.845385
## 925 MH-12-AC_HT27042011-5 1.000000 1.000000
## 926 MH-12-AC_HT27112010-3 1.000000 1.000000
## 927 MH-12-AC_HT28032010-1 1.000000 1.000000
## 928 MH-12-AC_HT28062010-2 1.000000 1.000000
## 929 MH-12-AC_HT28072010-1 1.000000 1.000000
## 930 MH-12-AC_HT29102010-1 1.000000 1.000000
## 931 MH-12-AC_HT29112010-2 1.000000 1.000000
## 932 MH-12-AC_HT30042010-8 1.000000 1.000000
## 933 MH-13-AC_HT02062011-1 1.000000 1.000000
## 934 MH-13-AC_HT02122010-1 1.000000 1.000000
## 935 MH-13-AC_HT03012011-3 1.000000 1.015052
## 936 MH-13-AC_HT03032011-1 1.000000 1.000000
## 937 MH-13-AC_HT03052012-4 1.000000 1.000000
## 938 MH-13-AC_HT03112012-2 1.000000 1.000000
## 939 MH-13-AC_HT04022011-7 1.000000 1.000000
## 940 MH-13-AC_HT04042011-7 2.243332 2.480624
## 941 MH-13-AC_HT05032011-4 1.000000 1.012752
## 942 MH-13-AC_HT05042011-1 1.000000 1.014890
## 943 MH-13-AC_HT06072011-2 1.462342 1.589113
## 944 MH-13-AC_HT06122011-3 1.000000 1.000000
## 945 MH-13-AC_HT08052011-5 1.000000 1.000000
## 946 MH-13-AC_HT08072011-5 1.000000 1.000000
## 947 MH-13-AC_HT08072011-6 1.000000 1.000000
## 948 MH-13-AC_HT08092012-1 1.000000 1.000000
## 949 MH-13-AC_HT08122010-1 1.000000 1.000000
## 950 MH-13-AC_HT08122012-1 1.000000 1.000000
## 951 MH-13-AC_HT11062010-3 1.000000 1.000000
## 952 MH-13-AC_HT11122012-3 1.074557 1.141178
## 953 MH-13-AC_HT12052011-8 2.577337 2.862875
## 954 MH-13-AC_HT12122010-1 1.000000 1.000000
## 955 MH-13-AC_HT14042011-5 1.043777 1.091797
## 956 MH-13-AC_HT14122012-9 1.000000 1.000000
## 957 MH-13-AC_HT15022011-2 1.803790 1.995303
## 958 MH-13-AC_HT15122011-11 1.000000 1.000000
## 959 MH-13-AC_HT15122011-9 1.000000 1.000000
## 960 MH-13-AC_HT16012011-1 1.000000 1.000000
## 961 MH-13-AC_HT16022011-2 1.000000 1.000000
## 962 MH-13-AC_HT16032011-3 1.000000 1.000000
## 963 MH-13-AC_HT16052011-1 1.000000 1.015052
## 964 MH-13-AC_HT16112010-1 1.000000 1.000000
## 965 MH-13-AC_HT16122011-3 1.000000 1.000000
## 966 MH-13-AC_HT17022011-2 1.000000 1.000000
## 967 MH-13-AC_HT17022011-3 1.000000 1.000000
## 968 MH-13-AC_HT17052011-4 1.000000 1.000000
## 969 MH-13-AC_HT17052011-5 1.000000 1.000000
## 970 MH-13-AC_HT18022011-1 1.000000 1.000000
## 971 MH-13-AC_HT18022011-4 1.000000 1.000000
## 972 MH-13-AC_HT19052012-7 1.000000 1.000000
## 973 MH-13-AC_HT19092012-1 1.000000 1.000000
## 974 MH-13-AC_HT20072012-9 1.000000 1.000000
## 975 MH-13-AC_HT20092012-3 1.000000 1.000000
## 976 MH-13-AC_HT21052010-6 1.000000 1.000000
## 977 MH-13-AC_HT22022011-1 1.000000 1.000000
## 978 MH-13-AC_HT22032011-2 1.000000 1.000000
## 979 MH-13-AC_HT22052012-22 1.000000 1.000000
## 980 MH-13-AC_HT26122010-2 1.000000 1.024483
## 981 MH-13-AC_HT28032011-1 1.000000 1.000000
## 982 MH-13-AC_HT28072011-2 1.000000 1.000000
## 983 MH-13-AC_HT28072012-3 1.000000 1.000000
## 984 MH-13-AC_HT29092010-2 1.000000 1.000000
## 985 MH-13-AC_HT30082010-2 1.000000 1.000000
## post_effective_coi_upper post_effective_coi_mean
## 1 1.000000 1.000017
## 2 1.000000 1.000000
## 3 1.000000 1.000000
## 4 1.000000 1.000000
## 5 1.327606 1.047576
## 6 1.000000 1.000014
## 7 1.000000 1.000022
## 8 1.000000 1.000092
## 9 1.000000 1.000000
## 10 1.000000 1.000052
## 11 1.000000 1.000000
## 12 1.000000 1.000146
## 13 1.000000 1.000000
## 14 1.000000 1.000068
## 15 1.000000 1.000026
## 16 1.000000 1.000000
## 17 1.000000 1.000000
## 18 1.000000 1.000031
## 19 1.724679 1.559262
## 20 1.000000 1.000000
## 21 1.000000 1.000000
## 22 2.394689 2.174259
## 23 1.000000 1.000028
## 24 1.000000 1.000000
## 25 1.000000 1.000000
## 26 1.000000 1.000000
## 27 1.000000 1.000000
## 28 1.000000 1.000082
## 29 1.000000 1.000027
## 30 1.702609 1.561679
## 31 1.469244 1.330445
## 32 1.283237 1.190199
## 33 1.000000 1.000000
## 34 1.000000 1.000000
## 35 1.000000 1.000093
## 36 1.000000 1.000067
## 37 1.000000 1.000075
## 38 1.000000 1.000000
## 39 1.000000 1.000033
## 40 1.000000 1.000000
## 41 1.000000 1.000018
## 42 1.000000 1.000095
## 43 1.999318 1.972357
## 44 1.000000 1.000013
## 45 1.000000 1.000049
## 46 1.000000 1.000000
## 47 1.648105 1.485319
## 48 1.000000 1.000000
## 49 1.000000 1.000058
## 50 1.000000 1.000054
## 51 2.554096 2.242871
## 52 1.000000 1.000064
## 53 1.000000 1.000048
## 54 1.000000 1.000054
## 55 1.000000 1.000000
## 56 1.000000 1.000000
## 57 1.000000 1.000010
## 58 1.000000 1.000000
## 59 1.000000 1.000048
## 60 1.000000 1.000088
## 61 1.000000 1.000000
## 62 1.000000 1.000000
## 63 1.000000 1.000089
## 64 1.000000 1.000014
## 65 1.000000 1.000000
## 66 1.000000 1.000129
## 67 1.000000 1.000026
## 68 1.000000 1.000032
## 69 1.000000 1.000000
## 70 1.000000 1.000058
## 71 1.000000 1.000067
## 72 1.000000 1.000013
## 73 1.000000 1.000000
## 74 1.000000 1.000124
## 75 1.000000 1.000137
## 76 1.000000 1.000054
## 77 1.000000 1.000000
## 78 1.000000 1.000018
## 79 1.000000 1.000051
## 80 1.000000 1.000077
## 81 1.000000 1.000000
## 82 1.000000 1.000034
## 83 1.000000 1.000033
## 84 1.000000 1.000108
## 85 1.000000 1.000000
## 86 1.000000 1.000000
## 87 1.000000 1.000063
## 88 1.000000 1.000047
## 89 1.000000 1.000093
## 90 1.000000 1.000046
## 91 1.000000 1.000146
## 92 1.000000 1.000000
## 93 1.000000 1.000000
## 94 1.000000 1.000018
## 95 1.000000 1.000000
## 96 1.000000 1.000000
## 97 1.000000 1.000000
## 98 1.000000 1.000000
## 99 1.000000 1.000027
## 100 1.000000 1.000000
## 101 1.000000 1.000000
## 102 1.000000 1.000026
## 103 1.000000 1.000040
## 104 1.000000 1.000000
## 105 1.000000 1.000169
## 106 1.000000 1.000044
## 107 1.000000 1.000000
## 108 1.000000 1.000042
## 109 1.000000 1.000000
## 110 1.201263 1.120585
## 111 1.000000 1.000000
## 112 1.533215 1.393573
## 113 1.000000 1.000000
## 114 1.000000 1.000000
## 115 1.000000 1.000000
## 116 2.285256 2.096863
## 117 1.000000 1.000063
## 118 1.000000 1.000044
## 119 1.000000 1.000093
## 120 1.000000 1.000000
## 121 2.027380 1.840233
## 122 1.000000 1.000075
## 123 1.000000 1.000018
## 124 1.763719 1.606218
## 125 1.000000 1.000035
## 126 1.000000 1.000059
## 127 1.000000 1.000027
## 128 1.000000 1.000052
## 129 1.000000 1.000000
## 130 1.000000 1.000000
## 131 1.000000 1.000031
## 132 1.000000 1.000089
## 133 1.000000 1.000079
## 134 1.000000 1.000050
## 135 1.000000 1.000000
## 136 1.000000 1.000021
## 137 1.000000 1.000015
## 138 1.000000 1.000000
## 139 1.000000 1.000000
## 140 1.000000 1.000000
## 141 1.000000 1.000000
## 142 1.000000 1.000047
## 143 1.000000 1.000000
## 144 1.000000 1.000045
## 145 1.000000 1.000058
## 146 1.000000 1.000000
## 147 1.000000 1.000054
## 148 1.000000 1.000095
## 149 1.000000 1.000000
## 150 1.000000 1.000010
## 151 1.000000 1.000200
## 152 1.000000 1.000155
## 153 1.000000 1.000000
## 154 1.043883 1.003470
## 155 1.000000 1.000050
## 156 1.000000 1.000124
## 157 1.000000 1.000010
## 158 1.000000 1.000109
## 159 1.000000 1.000000
## 160 1.000000 1.000083
## 161 1.000000 1.000065
## 162 1.000000 1.000036
## 163 1.000000 1.000000
## 164 1.026600 1.001655
## 165 1.000000 1.000000
## 166 1.000000 1.000020
## 167 1.000000 1.000068
## 168 1.000000 1.000000
## 169 1.000000 1.000019
## 170 1.000000 1.000000
## 171 1.000000 1.000054
## 172 1.000000 1.000000
## 173 1.000000 1.000027
## 174 1.000000 1.000000
## 175 1.106609 1.050727
## 176 1.000000 1.000000
## 177 1.000000 1.000075
## 178 1.000000 1.000197
## 179 1.000000 1.000000
## 180 1.000000 1.000015
## 181 1.000000 1.000000
## 182 1.000000 1.000011
## 183 1.000000 1.000000
## 184 1.000000 1.000083
## 185 1.000000 1.000037
## 186 1.000000 1.000000
## 187 1.000000 1.000000
## 188 1.000000 1.000021
## 189 1.000000 1.000000
## 190 1.015778 1.000821
## 191 1.000000 1.000027
## 192 1.000000 1.000025
## 193 1.000000 1.000055
## 194 1.000000 1.000060
## 195 1.000000 1.000000
## 196 1.097569 1.023361
## 197 1.000000 1.000087
## 198 1.000000 1.000052
## 199 1.000000 1.000025
## 200 1.000000 1.000022
## 201 1.000000 1.000186
## 202 1.000000 1.000000
## 203 1.000000 1.000000
## 204 1.000000 1.000000
## 205 1.000000 1.000000
## 206 1.000000 1.000045
## 207 1.000000 1.000019
## 208 1.000000 1.000046
## 209 1.000000 1.000017
## 210 1.000000 1.000061
## 211 1.000000 1.000000
## 212 1.000000 1.000116
## 213 1.000000 1.000000
## 214 1.000000 1.000016
## 215 1.000000 1.000115
## 216 1.000000 1.000000
## 217 1.000000 1.000019
## 218 1.000000 1.000028
## 219 1.000000 1.000000
## 220 1.000000 1.000030
## 221 1.000000 1.000000
## 222 1.000000 1.000067
## 223 1.000000 1.000015
## 224 1.000000 1.000027
## 225 1.000000 1.000000
## 226 1.000000 1.000129
## 227 1.000000 1.000040
## 228 1.000000 1.000045
## 229 1.000000 1.000036
## 230 1.000000 1.000000
## 231 1.000000 1.000112
## 232 1.000000 1.000000
## 233 1.000000 1.000012
## 234 1.000000 1.000000
## 235 1.000000 1.000025
## 236 1.687894 1.546230
## 237 1.000000 1.000000
## 238 1.000000 1.000000
## 239 1.000000 1.000000
## 240 1.000000 1.000038
## 241 1.000000 1.000000
## 242 1.000000 1.000000
## 243 1.000000 1.000061
## 244 1.000000 1.000051
## 245 1.000000 1.000041
## 246 1.000000 1.000000
## 247 1.000000 1.000000
## 248 1.000000 1.000105
## 249 1.089556 1.039101
## 250 1.972136 1.787025
## 251 1.000000 1.000048
## 252 1.000000 1.000000
## 253 1.000000 1.000000
## 254 1.000000 1.000000
## 255 1.000000 1.000000
## 256 1.000000 1.000028
## 257 1.000000 1.000012
## 258 4.699480 4.301982
## 259 1.000000 1.000000
## 260 1.000000 1.000026
## 261 1.000000 1.000000
## 262 1.000000 1.000043
## 263 1.000000 1.000040
## 264 1.000000 1.000000
## 265 1.000000 1.000075
## 266 1.000000 1.000028
## 267 1.000000 1.000000
## 268 1.000000 1.000000
## 269 1.000000 1.000000
## 270 1.000000 1.000152
## 271 1.000000 1.000000
## 272 1.000000 1.000037
## 273 1.000000 1.000000
## 274 1.000000 1.000000
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## 706 MH-08-AC_HT12082012-1 0.0000000000 0.00000000
## 707 MH-08-AC_HT12122012-3 0.0000000000 0.00000000
## 708 MH-08-AC_HT12122012-5 0.0000000000 0.00000000
## 709 MH-08-AC_HT13062012-2 0.7808597017 0.83724249
## 710 MH-08-AC_HT13122012-3 0.0000000000 0.00000000
## 711 MH-08-AC_HT14062012-7 0.0000000000 0.00000000
## 712 MH-08-AC_HT14082012-1 0.4378741117 0.52110450
## 713 MH-08-AC_HT14122012-4 0.0000000000 0.00000000
## 714 MH-08-AC_HT15112012-2 0.0000000000 0.00000000
## 715 MH-08-AC_HT15122012-1 0.0000000000 0.00000000
## 716 MH-08-AC_HT15122012-4 0.0000000000 0.00000000
## 717 MH-08-AC_HT16062012-12 0.0000000000 0.00000000
## 718 MH-08-AC_HT16072012-8 0.0000000000 0.00000000
## 719 MH-08-AC_HT16082012-4 0.0000000000 0.00000000
## 720 MH-08-AC_HT16102012-3 0.4522625465 0.53664182
## 721 MH-08-AC_HT17072012-11 0.0000000000 0.00000000
## 722 MH-08-AC_HT17072012-19 0.8144952882 0.88410726
## 723 MH-08-AC_HT17072012-2 0.0000000000 0.00000000
## 724 MH-08-AC_HT17122012-2 0.0000000000 0.00000000
## 725 MH-08-AC_HT17122012-3 0.0000000000 0.00000000
## 726 MH-08-AC_HT18102012-2 0.0000000000 0.00000000
## 727 MH-08-AC_HT18102012-3 0.0000000000 0.00000000
## 728 MH-08-AC_HT20062012-26 0.0000000000 0.00000000
## 729 MH-08-AC_HT20072012-5 0.0000000000 0.00000000
## 730 MH-08-AC_HT20092012-1 0.0000000000 0.00000000
## 731 MH-08-AC_HT20092012-2 0.0000000000 0.00000000
## 732 MH-08-AC_HT20102012-1 0.0000000000 0.00000000
## 733 MH-08-AC_HT20102012-2 0.0000000000 0.00000000
## 734 MH-08-AC_HT20102012-3 0.0000000000 0.94213331
## 735 MH-08-AC_HT20112012-8 0.0000000000 0.00000000
## 736 MH-08-AC_HT21082012-1 0.0000000000 0.00000000
## 737 MH-08-AC_HT21112012-2 0.0000000000 0.00000000
## 738 MH-08-AC_HT21112012-3 0.0000000000 0.00000000
## 739 MH-08-AC_HT22102012-2 0.0000000000 0.00000000
## 740 MH-08-AC_HT22102012-5 0.0000000000 0.00000000
## 741 MH-08-AC_HT22112012-3 0.0000000000 0.00000000
## 742 MH-08-AC_HT22112012-7 0.0000000000 0.00000000
## 743 MH-08-AC_HT22122012-4 0.0000000000 0.00000000
## 744 MH-08-AC_HT23102012-3 0.0000000000 0.00000000
## 745 MH-08-AC_HT23112012-3 0.0000000000 0.00000000
## 746 MH-08-AC_HT25112012-1 0.0000000000 0.00000000
## 747 MH-08-AC_HT25112012-6 0.0000000000 0.00000000
## 748 MH-08-AC_HT26062012-4 0.0000000000 0.00000000
## 749 MH-08-AC_HT26092012-2 0.0000000000 0.00000000
## 750 MH-08-AC_HT26102012-1 0.0000000000 0.00000000
## 751 MH-08-AC_HT26102012-4 0.0000000000 0.00000000
## 752 MH-08-AC_HT26112012-4 0.0000000000 0.00000000
## 753 MH-08-AC_HT26112012-7 0.0000000000 0.00000000
## 754 MH-08-AC_HT27062012-5 0.0000000000 0.00000000
## 755 MH-08-AC_HT27082012-2 0.0000000000 0.00000000
## 756 MH-08-AC_HT28092012-3 0.0000000000 0.00000000
## 757 MH-08-AC_HT28112012-4 0.0000000000 0.00000000
## 758 MH-08-AC_HT29082012-2 0.6980484506 0.77663360
## 759 MH-08-AC_HT29122012-4 0.0000000000 0.00000000
## 760 MH-09-AC_HT01062012-10 0.0000000000 0.00000000
## 761 MH-09-AC_HT01062012-2 0.0000000000 0.00000000
## 762 MH-09-AC_HT01072011-6 0.0000000000 0.00000000
## 763 MH-09-AC_HT01072011-7 0.0000000000 0.00000000
## 764 MH-09-AC_HT01122011-13 0.0000000000 0.00000000
## 765 MH-09-AC_HT02042012-4 0.0000000000 0.00000000
## 766 MH-09-AC_HT02052012-4 0.0000000000 0.00000000
## 767 MH-09-AC_HT02062011-14 0.0000000000 0.00000000
## 768 MH-09-AC_HT02062011-8 0.0000000000 0.00000000
## 769 MH-09-AC_HT02062012-10 0.0000000000 0.00000000
## 770 MH-09-AC_HT02062012-25 0.0000000000 0.00000000
## 771 MH-09-AC_HT03032012-6 0.0000000000 0.00000000
## 772 MH-09-AC_HT03052012-2 0.0000000000 0.00000000
## 773 MH-09-AC_HT03062011-12 0.0000000000 0.00000000
## 774 MH-09-AC_HT04062011-6 0.0000000000 0.00000000
## 775 MH-09-AC_HT04072011-1 0.0000000000 0.00000000
## 776 MH-09-AC_HT04072011-6 0.0000000000 0.00000000
## 777 MH-09-AC_HT04122012-4 0.0000000000 0.00000000
## 778 MH-09-AC_HT05042012-2 0.0000000000 0.00000000
## 779 MH-09-AC_HT05052012-2 0.0000000000 0.00000000
## 780 MH-09-AC_HT05062011-1 0.8531005076 0.90813879
## 781 MH-09-AC_HT05072011-4 0.0000000000 0.00000000
## 782 MH-09-AC_HT06042012-3 0.0000000000 0.00000000
## 783 MH-09-AC_HT06072011-1 0.0000000000 0.00000000
## 784 MH-09-AC_HT07042012-1 0.0000000000 0.00000000
## 785 MH-09-AC_HT07122011-12 0.0000000000 0.00000000
## 786 MH-09-AC_HT07122011-2 0.0000000000 0.00000000
## 787 MH-09-AC_HT07122011-7 0.0000000000 0.00000000
## 788 MH-09-AC_HT08072011-2 0.0000000000 0.00000000
## 789 MH-09-AC_HT08122011-6 0.7564817278 0.81351815
## 790 MH-09-AC_HT10062011-2 0.0000000000 0.00000000
## 791 MH-09-AC_HT10062011-4 0.0000000000 0.00000000
## 792 MH-09-AC_HT11012012-9 0.0000000000 0.00000000
## 793 MH-09-AC_HT11062011-7 0.0000000000 0.00000000
## 794 MH-09-AC_HT11062011-8 0.0000000000 0.00000000
## 795 MH-09-AC_HT11072011-1 0.3364500048 0.45135084
## 796 MH-09-AC_HT11072011-3 0.0000000000 0.00000000
## 797 MH-09-AC_HT12052012-11 0.0000000000 0.00000000
## 798 MH-09-AC_HT13072011-4 0.0000000000 0.00000000
## 799 MH-09-AC_HT13122011-10 0.0000000000 0.00000000
## 800 MH-09-AC_HT14122012-7 0.0000000000 0.96698241
## 801 MH-09-AC_HT15032012-4 0.0000000000 0.00000000
## 802 MH-09-AC_HT15042012-2 0.0000000000 0.00000000
## 803 MH-09-AC_HT15052012-13 0.0000000000 0.00000000
## 804 MH-09-AC_HT15062011-12 0.0000000000 0.00000000
## 805 MH-09-AC_HT15122011-1 0.0000000000 0.00000000
## 806 MH-09-AC_HT15122011-3 0.0000000000 0.00000000
## 807 MH-09-AC_HT16052012-7 0.0000000000 0.00000000
## 808 MH-09-AC_HT16062011-1 0.0000000000 0.00000000
## 809 MH-09-AC_HT16072011-2 0.0000000000 0.00000000
## 810 MH-09-AC_HT16072011-3 0.0000000000 0.00000000
## 811 MH-09-AC_HT16102012-2 0.0000000000 0.00000000
## 812 MH-09-AC_HT17042012-1 0.0000000000 0.00000000
## 813 MH-09-AC_HT18072011-2 0.0000000000 0.00000000
## 814 MH-09-AC_HT18122011-5 0.7223290433 0.81598450
## 815 MH-09-AC_HT19122011-5 0.7378056529 0.80302814
## 816 MH-09-AC_HT20022012-9 0.4349464679 0.50702392
## 817 MH-09-AC_HT21052010-4 0.0000000000 0.00000000
## 818 MH-09-AC_HT21052010-8 0.0000000000 0.00000000
## 819 MH-09-AC_HT22052012-10 0.0000000000 0.00000000
## 820 MH-09-AC_HT22052012-16 0.0000000000 0.00000000
## 821 MH-09-AC_HT22062011-1 0.0000000000 0.00000000
## 822 MH-09-AC_HT23052012-14 0.0000000000 0.00000000
## 823 MH-09-AC_HT23052012-5 0.0000000000 0.00000000
## 824 MH-09-AC_HT23112012-2 0.0000000000 0.00000000
## 825 MH-09-AC_HT24052012-7 0.5088052505 0.59212743
## 826 MH-09-AC_HT25042012-4 0.0000000000 0.00000000
## 827 MH-09-AC_HT25042012-6 0.0000000000 0.00000000
## 828 MH-09-AC_HT26052012-1 0.0000000000 0.00000000
## 829 MH-09-AC_HT26072011-2 0.0000000000 0.00000000
## 830 MH-09-AC_HT26122011-2 0.7902908289 0.86662535
## 831 MH-09-AC_HT26122011-4 0.0000000000 0.00000000
## 832 MH-09-AC_HT27032012-5 0.0000000000 0.00000000
## 833 MH-09-AC_HT27072011-1 0.0000000000 0.00000000
## 834 MH-09-AC_HT29052012-16 0.0000000000 0.00000000
## 835 MH-09-AC_HT29052012-6 0.0000000000 0.00000000
## 836 MH-09-AC_HT29062011-4 0.0000000000 0.00000000
## 837 MH-09-AC_HT30052011-1 0.0000000000 0.00000000
## 838 MH-09-AC_HT30052011-6 0.8101958894 0.89746731
## 839 MH-11-AC_HT01062010-3 0.0000000000 0.00000000
## 840 MH-11-AC_HT02072010-1 0.0730122614 0.23405129
## 841 MH-11-AC_HT03112010-3 0.0000000000 0.00000000
## 842 MH-11-AC_HT04032011-3 0.0000000000 0.00000000
## 843 MH-11-AC_HT04062010-4 0.0000000000 0.00000000
## 844 MH-11-AC_HT05062010-2 0.0000000000 0.00000000
## 845 MH-11-AC_HT07062010-1 0.0000000000 0.00000000
## 846 MH-11-AC_HT08032011-3 0.0000000000 0.00000000
## 847 MH-11-AC_HT08082010-1 0.0000000000 0.00000000
## 848 MH-11-AC_HT08112010-1 0.0000000000 0.00000000
## 849 MH-11-AC_HT08112010-3 0.0000000000 0.00000000
## 850 MH-11-AC_HT09102010-1 0.0000000000 0.00000000
## 851 MH-11-AC_HT10052010-8 0.0000000000 0.00000000
## 852 MH-11-AC_HT10052011-9 0.8755784706 0.93696758
## 853 MH-11-AC_HT10112010-2 0.1532275209 0.32004647
## 854 MH-11-AC_HT11072010-1 0.0000000000 0.00000000
## 855 MH-11-AC_HT11072010-3 0.0000000000 0.00000000
## 856 MH-11-AC_HT11092010-1 0.8708711050 0.94324931
## 857 MH-11-AC_HT11102010-5 0.0000000000 0.00000000
## 858 MH-11-AC_HT13102010-4 0.0000000000 0.00000000
## 859 MH-11-AC_HT14102010-2 0.4644521663 0.54534267
## 860 MH-11-AC_HT15072010-3 0.0000000000 0.00000000
## 861 MH-11-AC_HT16032010-7 0.0000000000 0.00000000
## 862 MH-11-AC_HT16042011-10 0.0000000000 0.00000000
## 863 MH-11-AC_HT17062010-1 0.0000000000 0.00000000
## 864 MH-11-AC_HT19032010-5 0.0000000000 0.00000000
## 865 MH-11-AC_HT19092010-1 0.0000000000 0.00000000
## 866 MH-11-AC_HT20102010-5 0.0000000000 0.00000000
## 867 MH-11-AC_HT21062010-4 0.0000000000 0.00000000
## 868 MH-11-AC_HT28032010-4 0.0000000000 0.00000000
## 869 MH-11-AC_HT28052010-2 0.0000000000 0.00000000
## 870 MH-11-AC_HT28072010-2 0.0000000000 0.00000000
## 871 MH-11-AC_HT28092010-3 0.0000000000 0.00000000
## 872 MH-12-AC_HT01062010-1 0.0000000000 0.00000000
## 873 MH-12-AC_HT02062010-5 0.0000000000 0.00000000
## 874 MH-12-AC_HT03042011-3 0.0000000000 0.00000000
## 875 MH-12-AC_HT04092010-3 0.0000000000 0.00000000
## 876 MH-12-AC_HT04112010-1 0.0000000000 0.00000000
## 877 MH-12-AC_HT05052010-2 0.0000000000 0.00000000
## 878 MH-12-AC_HT05072010-1 0.0000000000 0.00000000
## 879 MH-12-AC_HT05102010-1 0.0000000000 0.00000000
## 880 MH-12-AC_HT05102010-3 0.2900685251 0.39727540
## 881 MH-12-AC_HT06052011-7 0.0000000000 0.00000000
## 882 MH-12-AC_HT06112010-1 0.3588533971 0.44553584
## 883 MH-12-AC_HT08042011-6 0.0000000000 0.00000000
## 884 MH-12-AC_HT09032011-6 0.0000000000 0.00000000
## 885 MH-12-AC_HT10052010-10 0.0000000000 0.00000000
## 886 MH-12-AC_HT10052010-11 0.0000000000 0.00000000
## 887 MH-12-AC_HT10082010-1 0.7067978237 0.85665329
## 888 MH-12-AC_HT11052011-4 0.6933077772 0.77176417
## 889 MH-12-AC_HT11112010-2 0.0000000000 0.00000000
## 890 MH-12-AC_HT13052011-5 0.0000000000 0.00000000
## 891 MH-12-AC_HT13072010-4 0.0000000000 0.00000000
## 892 MH-12-AC_HT13102010-3 0.0000000000 0.00000000
## 893 MH-12-AC_HT14102010-1 0.0000000000 0.00000000
## 894 MH-12-AC_HT14122010-4 0.0000000000 0.00000000
## 895 MH-12-AC_HT15122010-2 0.0000000000 0.00000000
## 896 MH-12-AC_HT16022011-1 0.4510521192 0.81033090
## 897 MH-12-AC_HT16022011-3 0.3862152289 0.68645577
## 898 MH-12-AC_HT16052011-5 0.0000000000 0.00000000
## 899 MH-12-AC_HT17062010-2 0.0000000000 0.00000000
## 900 MH-12-AC_HT18042011-10 0.0000000000 0.00000000
## 901 MH-12-AC_HT18082010-1 0.0000000000 0.00000000
## 902 MH-12-AC_HT18102010-3 0.0000000000 0.00000000
## 903 MH-12-AC_HT19032011-1 0.0000000000 0.00000000
## 904 MH-12-AC_HT20052011-1 0.0000000000 0.00000000
## 905 MH-12-AC_HT20102010-2 0.0000000000 0.00000000
## 906 MH-12-AC_HT22042011-2 0.0000000000 0.00000000
## 907 MH-12-AC_HT22042011-3 0.0000000000 0.00000000
## 908 MH-12-AC_HT22072010-1 0.0000000000 0.00000000
## 909 MH-12-AC_HT22102010-1 0.0000000000 0.00000000
## 910 MH-12-AC_HT22102010-2 0.0000000000 0.00000000
## 911 MH-12-AC_HT22102010-3 0.0000000000 0.00000000
## 912 MH-12-AC_HT23022011-1 0.0000000000 0.00000000
## 913 MH-12-AC_HT23062010-1 0.0000000000 0.00000000
## 914 MH-12-AC_HT23072010-1 0.0000000000 0.00000000
## 915 MH-12-AC_HT23122010-1 0.0000000000 0.00000000
## 916 MH-12-AC_HT24052011-5 0.0000000000 0.00000000
## 917 MH-12-AC_HT24122010-2 0.0000000000 0.00000000
## 918 MH-12-AC_HT25012011-1 0.0000000000 0.00000000
## 919 MH-12-AC_HT25052011-5 0.0000000000 0.00000000
## 920 MH-12-AC_HT25052011-6 0.0000000000 0.00000000
## 921 MH-12-AC_HT26022011-1 0.0000000000 0.00000000
## 922 MH-12-AC_HT26032010-7 0.0000000000 0.00000000
## 923 MH-12-AC_HT26032011-1 0.0000000000 0.00000000
## 924 MH-12-AC_HT26032011-5 0.6562203335 0.72378967
## 925 MH-12-AC_HT27042011-5 0.0000000000 0.00000000
## 926 MH-12-AC_HT27112010-3 0.0000000000 0.00000000
## 927 MH-12-AC_HT28032010-1 0.0000000000 0.00000000
## 928 MH-12-AC_HT28062010-2 0.0000000000 0.00000000
## 929 MH-12-AC_HT28072010-1 0.0000000000 0.00000000
## 930 MH-12-AC_HT29102010-1 0.0000000000 0.00000000
## 931 MH-12-AC_HT29112010-2 0.0000000000 0.00000000
## 932 MH-12-AC_HT30042010-8 0.0000000000 0.00000000
## 933 MH-13-AC_HT02062011-1 0.0000000000 0.00000000
## 934 MH-13-AC_HT02122010-1 0.0000000000 0.00000000
## 935 MH-13-AC_HT03012011-3 0.0000000000 0.93043872
## 936 MH-13-AC_HT03032011-1 0.0000000000 0.00000000
## 937 MH-13-AC_HT03052012-4 0.0000000000 0.00000000
## 938 MH-13-AC_HT03112012-2 0.0000000000 0.00000000
## 939 MH-13-AC_HT04022011-7 0.0000000000 0.00000000
## 940 MH-13-AC_HT04042011-7 0.5813689674 0.67915640
## 941 MH-13-AC_HT05032011-4 0.0000000000 0.92596320
## 942 MH-13-AC_HT05042011-1 0.0000000000 0.92826118
## 943 MH-13-AC_HT06072011-2 0.7226012996 0.80921975
## 944 MH-13-AC_HT06122011-3 0.0000000000 0.00000000
## 945 MH-13-AC_HT08052011-5 0.0000000000 0.00000000
## 946 MH-13-AC_HT08072011-5 0.0000000000 0.00000000
## 947 MH-13-AC_HT08072011-6 0.0000000000 0.00000000
## 948 MH-13-AC_HT08092012-1 0.0000000000 0.00000000
## 949 MH-13-AC_HT08122010-1 0.0000000000 0.00000000
## 950 MH-13-AC_HT08122012-1 0.0000000000 0.00000000
## 951 MH-13-AC_HT11062010-3 0.0000000000 0.00000000
## 952 MH-13-AC_HT11122012-3 0.8813474783 0.93264442
## 953 MH-13-AC_HT12052011-8 0.2844650998 0.38913911
## 954 MH-13-AC_HT12122010-1 0.0000000000 0.00000000
## 955 MH-13-AC_HT14042011-5 0.8394288225 0.91107150
## 956 MH-13-AC_HT14122012-9 0.0000000000 0.00000000
## 957 MH-13-AC_HT15022011-2 0.4602266084 0.65440004
## 958 MH-13-AC_HT15122011-11 0.0000000000 0.00000000
## 959 MH-13-AC_HT15122011-9 0.0000000000 0.00000000
## 960 MH-13-AC_HT16012011-1 0.0000000000 0.00000000
## 961 MH-13-AC_HT16022011-2 0.0000000000 0.00000000
## 962 MH-13-AC_HT16032011-3 0.0000000000 0.00000000
## 963 MH-13-AC_HT16052011-1 0.0000000000 0.92545626
## 964 MH-13-AC_HT16112010-1 0.0000000000 0.00000000
## 965 MH-13-AC_HT16122011-3 0.0000000000 0.00000000
## 966 MH-13-AC_HT17022011-2 0.0000000000 0.00000000
## 967 MH-13-AC_HT17022011-3 0.0000000000 0.00000000
## 968 MH-13-AC_HT17052011-4 0.0000000000 0.00000000
## 969 MH-13-AC_HT17052011-5 0.0000000000 0.00000000
## 970 MH-13-AC_HT18022011-1 0.0000000000 0.00000000
## 971 MH-13-AC_HT18022011-4 0.0000000000 0.00000000
## 972 MH-13-AC_HT19052012-7 0.0000000000 0.00000000
## 973 MH-13-AC_HT19092012-1 0.0000000000 0.00000000
## 974 MH-13-AC_HT20072012-9 0.0000000000 0.00000000
## 975 MH-13-AC_HT20092012-3 0.0000000000 0.00000000
## 976 MH-13-AC_HT21052010-6 0.0000000000 0.00000000
## 977 MH-13-AC_HT22022011-1 0.0000000000 0.00000000
## 978 MH-13-AC_HT22032011-2 0.0000000000 0.00000000
## 979 MH-13-AC_HT22052012-22 0.0000000000 0.00000000
## 980 MH-13-AC_HT26122010-2 0.0000000000 0.95484111
## 981 MH-13-AC_HT28032011-1 0.0000000000 0.00000000
## 982 MH-13-AC_HT28072011-2 0.0000000000 0.00000000
## 983 MH-13-AC_HT28072012-3 0.0000000000 0.00000000
## 984 MH-13-AC_HT29092010-2 0.0000000000 0.00000000
## 985 MH-13-AC_HT30082010-2 0.0000000000 0.00000000
## post_relatedness_upper post_relatedness_mean
## 1 0.00000000 0.0009831327
## 2 0.00000000 0.0000000000
## 3 0.00000000 0.0000000000
## 4 0.00000000 0.0000000000
## 5 0.75909552 0.1187851018
## 6 0.00000000 0.0009864608
## 7 0.00000000 0.0009781589
## 8 0.00000000 0.0029083572
## 9 0.00000000 0.0000000000
## 10 0.00000000 0.0019484821
## 11 0.00000000 0.0000000000
## 12 0.00000000 0.0048538934
## 13 0.00000000 0.0000000000
## 14 0.00000000 0.0019322474
## 15 0.00000000 0.0019743203
## 16 0.00000000 0.0000000000
## 17 0.00000000 0.0000000000
## 18 0.00000000 0.0009687281
## 19 0.88573607 0.8208133787
## 20 0.00000000 0.0000000000
## 21 0.00000000 0.0000000000
## 22 0.69564308 0.6125065546
## 23 0.00000000 0.0019715162
## 24 0.00000000 0.0000000000
## 25 0.00000000 0.0000000000
## 26 0.00000000 0.0000000000
## 27 0.00000000 0.0000000000
## 28 0.00000000 0.0039180126
## 29 0.00000000 0.0019726236
## 30 0.83903413 0.7371506891
## 31 0.91742774 0.8455731324
## 32 0.91092723 0.8157369654
## 33 0.00000000 0.0000000000
## 34 0.00000000 0.0000000000
## 35 0.00000000 0.0039069399
## 36 0.00000000 0.0029332515
## 37 0.00000000 0.0029247282
## 38 0.00000000 0.0000000000
## 39 0.00000000 0.0029669492
## 40 0.00000000 0.0000000000
## 41 0.00000000 0.0009823339
## 42 0.00000000 0.0049054889
## 43 0.09367167 0.0276428602
## 44 0.00000000 0.0009869502
## 45 0.00000000 0.0019508363
## 46 0.00000000 0.0000000000
## 47 0.86166755 0.7669350798
## 48 0.00000000 0.0000000000
## 49 0.00000000 0.0029424640
## 50 0.00000000 0.0019457465
## 51 0.44321986 0.2622197889
## 52 0.00000000 0.0049361562
## 53 0.00000000 0.0029518907
## 54 0.00000000 0.0029459072
## 55 0.00000000 0.0000000000
## 56 0.00000000 0.0000000000
## 57 0.00000000 0.0009898163
## 58 0.00000000 0.0000000000
## 59 0.00000000 0.0019518523
## 60 0.00000000 0.0039120288
## 61 0.00000000 0.0000000000
## 62 0.00000000 0.0000000000
## 63 0.00000000 0.0029112413
## 64 0.00000000 0.0009855196
## 65 0.00000000 0.0000000000
## 66 0.00000000 0.0038842402
## 67 0.00000000 0.0019738253
## 68 0.00000000 0.0009676474
## 69 0.00000000 0.0000000000
## 70 0.00000000 0.0019416480
## 71 0.00000000 0.0019325047
## 72 0.00000000 0.0009866198
## 73 0.00000000 0.0000000000
## 74 0.00000000 0.0048761324
## 75 0.00000000 0.0048627114
## 76 0.00000000 0.0019461909
## 77 0.00000000 0.0000000000
## 78 0.00000000 0.0009815922
## 79 0.00000000 0.0019488667
## 80 0.00000000 0.0029226497
## 81 0.00000000 0.0000000000
## 82 0.00000000 0.0019662871
## 83 0.00000000 0.0009673426
## 84 0.00000000 0.0048918369
## 85 0.00000000 0.0000000000
## 86 0.00000000 0.0000000000
## 87 0.00000000 0.0029370967
## 88 0.00000000 0.0029525372
## 89 0.00000000 0.0039178677
## 90 0.00000000 0.0019536256
## 91 0.00000000 0.0048544373
## 92 0.00000000 0.0000000000
## 93 0.00000000 0.0000000000
## 94 0.00000000 0.0009817332
## 95 0.00000000 0.0000000000
## 96 0.00000000 0.0000000000
## 97 0.00000000 0.0000000000
## 98 0.00000000 0.0000000000
## 99 0.00000000 0.0019725212
## 100 0.00000000 0.0000000000
## 101 0.00000000 0.0000000000
## 102 0.00000000 0.0009735769
## 103 0.00000000 0.0019745345
## 104 0.00000000 0.0000000000
## 105 0.00000000 0.0028310996
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## 737 0.00000000 0.0009839694
## 738 0.00000000 0.0000000000
## 739 0.84361274 0.3090906828
## 740 0.00000000 0.0048909172
## 741 0.00000000 0.0000000000
## 742 0.00000000 0.0019719304
## 743 0.00000000 0.0019711609
## 744 0.98672021 0.3410476897
## 745 0.00000000 0.0000000000
## 746 0.00000000 0.0000000000
## 747 0.00000000 0.0000000000
## 748 0.00000000 0.0019692027
## 749 0.00000000 0.0000000000
## 750 0.00000000 0.0000000000
## 751 0.00000000 0.0000000000
## 752 0.00000000 0.0019702630
## 753 0.00000000 0.0019697805
## 754 0.00000000 0.0000000000
## 755 0.00000000 0.0000000000
## 756 0.00000000 0.0000000000
## 757 0.00000000 0.0029351158
## 758 0.83773792 0.7739863871
## 759 0.00000000 0.0000000000
## 760 0.00000000 0.0009881902
## 761 0.00000000 0.0019729099
## 762 0.00000000 0.0039324345
## 763 0.00000000 0.0029329262
## 764 0.00000000 0.0049170004
## 765 0.00000000 0.0019722349
## 766 0.00000000 0.0000000000
## 767 0.00000000 0.0009803315
## 768 0.00000000 0.0019640962
## 769 0.00000000 0.0009307757
## 770 0.00000000 0.0009884631
## 771 0.00000000 0.0029158314
## 772 0.00000000 0.0009831932
## 773 0.00000000 0.0000000000
## 774 0.00000000 0.0058333783
## 775 0.00000000 0.0009737553
## 776 0.00000000 0.0000000000
## 777 0.00000000 0.0000000000
## 778 0.00000000 0.0029335177
## 779 0.00000000 0.0000000000
## 780 0.95195358 0.9069256736
## 781 0.00000000 0.0009857272
## 782 0.00000000 0.0000000000
## 783 0.00000000 0.0000000000
## 784 0.00000000 0.0009823744
## 785 0.00000000 0.0000000000
## 786 0.00000000 0.0000000000
## 787 0.00000000 0.0039118205
## 788 0.00000000 0.0000000000
## 789 0.88151138 0.8148672155
## 790 0.00000000 0.0009858754
## 791 0.00000000 0.0009860413
## 792 0.00000000 0.0028994382
## 793 0.00000000 0.0068407183
## 794 0.00000000 0.0009838383
## 795 0.55326766 0.4488380454
## 796 0.00000000 0.0019348575
## 797 0.00000000 0.0000000000
## 798 0.00000000 0.0009833053
## 799 0.00000000 0.0029012010
## 800 0.98842135 0.8207973930
## 801 0.00000000 0.0009891221
## 802 0.00000000 0.0000000000
## 803 0.00000000 0.0000000000
## 804 0.00000000 0.0000000000
## 805 0.00000000 0.0000000000
## 806 0.00000000 0.0000000000
## 807 0.00000000 0.0029694578
## 808 0.00000000 0.0009875584
## 809 0.00000000 0.0009894699
## 810 0.00000000 0.0019738371
## 811 0.00000000 0.0000000000
## 812 0.00000000 0.0029514446
## 813 0.00000000 0.0049156602
## 814 0.90866576 0.8138348881
## 815 0.86878333 0.8022733146
## 816 0.59713693 0.5090588693
## 817 0.00000000 0.0000000000
## 818 0.00000000 0.0009886696
## 819 0.00000000 0.0019625634
## 820 0.00000000 0.0009714968
## 821 0.00000000 0.0000000000
## 822 0.00000000 0.0000000000
## 823 0.00000000 0.0000000000
## 824 0.00000000 0.0009868570
## 825 0.70015495 0.5939727537
## 826 0.00000000 0.0009634687
## 827 0.00000000 0.0000000000
## 828 0.00000000 0.0009864038
## 829 0.00000000 0.0038828564
## 830 0.92718988 0.8652946661
## 831 0.00000000 0.0019666332
## 832 0.00000000 0.0000000000
## 833 0.00000000 0.0000000000
## 834 0.00000000 0.0029595088
## 835 0.00000000 0.0009861032
## 836 0.00000000 0.0029387391
## 837 0.00000000 0.0009790448
## 838 0.95854058 0.8940603055
## 839 0.00000000 0.0009709539
## 840 0.57956021 0.3091678749
## 841 0.00000000 0.0029190412
## 842 0.98525953 0.1612010660
## 843 0.00000000 0.0000000000
## 844 0.00000000 0.0000000000
## 845 0.00000000 0.0009765671
## 846 0.98727136 0.2358634282
## 847 0.00000000 0.0000000000
## 848 0.00000000 0.0039135629
## 849 0.00000000 0.0009791958
## 850 0.00000000 0.0000000000
## 851 0.00000000 0.0000000000
## 852 0.97817635 0.9334973118
## 853 0.45278614 0.3204843032
## 854 0.00000000 0.0000000000
## 855 0.00000000 0.0049282811
## 856 0.98104476 0.9335503484
## 857 0.98743582 0.2587349843
## 858 0.00000000 0.0000000000
## 859 0.66905199 0.5518706423
## 860 0.00000000 0.0009880834
## 861 0.00000000 0.0000000000
## 862 0.00000000 0.0000000000
## 863 0.00000000 0.0009785215
## 864 0.00000000 0.0019585293
## 865 0.00000000 0.0019156964
## 866 0.97749883 0.0449282739
## 867 0.00000000 0.0000000000
## 868 0.00000000 0.0000000000
## 869 0.00000000 0.0019768545
## 870 0.00000000 0.0106850356
## 871 0.98715846 0.2666613141
## 872 0.00000000 0.0009527632
## 873 0.00000000 0.0000000000
## 874 0.00000000 0.0000000000
## 875 0.00000000 0.0019762467
## 876 0.00000000 0.0000000000
## 877 0.00000000 0.0019712872
## 878 0.00000000 0.0029600386
## 879 0.00000000 0.0000000000
## 880 0.50520184 0.3984349332
## 881 0.00000000 0.0000000000
## 882 0.51757808 0.4436901975
## 883 0.00000000 0.0029083300
## 884 0.00000000 0.0029280541
## 885 0.00000000 0.0009891588
## 886 0.00000000 0.0019453801
## 887 0.91382793 0.8476721489
## 888 0.85513761 0.7714410460
## 889 0.00000000 0.0029564911
## 890 0.00000000 0.0009890838
## 891 0.00000000 0.0000000000
## 892 0.00000000 0.0029544567
## 893 0.00000000 0.0029420460
## 894 0.00000000 0.0009799290
## 895 0.00000000 0.0009575407
## 896 0.87066063 0.7787353342
## 897 0.80579740 0.6273499950
## 898 0.00000000 0.0000000000
## 899 0.00000000 0.0009561085
## 900 0.00000000 0.0000000000
## 901 0.00000000 0.0000000000
## 902 0.00000000 0.0000000000
## 903 0.00000000 0.0068107688
## 904 0.00000000 0.0009834775
## 905 0.00000000 0.0029359571
## 906 0.00000000 0.0019732930
## 907 0.00000000 0.0009556246
## 908 0.00000000 0.0009810097
## 909 0.00000000 0.0019655955
## 910 0.00000000 0.0019636428
## 911 0.00000000 0.0009887101
## 912 0.00000000 0.0000000000
## 913 0.00000000 0.0000000000
## 914 0.00000000 0.0009838810
## 915 0.00000000 0.0000000000
## 916 0.00000000 0.0000000000
## 917 0.00000000 0.0009760572
## 918 0.00000000 0.0029224238
## 919 0.00000000 0.0019710731
## 920 0.00000000 0.0000000000
## 921 0.00000000 0.0000000000
## 922 0.00000000 0.0019723083
## 923 0.00000000 0.0009800746
## 924 0.80842006 0.7255752221
## 925 0.00000000 0.0019593261
## 926 0.00000000 0.0009852432
## 927 0.00000000 0.0000000000
## 928 0.00000000 0.0000000000
## 929 0.00000000 0.0009899225
## 930 0.00000000 0.0019758040
## 931 0.00000000 0.0009857593
## 932 0.00000000 0.0000000000
## 933 0.00000000 0.0077629565
## 934 0.00000000 0.0019500349
## 935 0.98601918 0.5107503905
## 936 0.00000000 0.0000000000
## 937 0.97480600 0.0381723477
## 938 0.00000000 0.0000000000
## 939 0.00000000 0.0000000000
## 940 0.77072174 0.6755597679
## 941 0.98728028 0.5027545238
## 942 0.98748189 0.5198246369
## 943 0.87870560 0.8094403649
## 944 0.00000000 0.0000000000
## 945 0.96843704 0.0483660506
## 946 0.97168623 0.0369559853
## 947 0.00000000 0.0000000000
## 948 0.96598466 0.0369147297
## 949 0.00000000 0.0000000000
## 950 0.00000000 0.0000000000
## 951 0.00000000 0.0009892605
## 952 0.96707585 0.9299989774
## 953 0.55941410 0.3976440274
## 954 0.00000000 0.0000000000
## 955 0.96693998 0.9089386398
## 956 0.97180976 0.0541166438
## 957 0.76086102 0.6334837967
## 958 0.00000000 0.0019380566
## 959 0.00000000 0.0029281630
## 960 0.00000000 0.0000000000
## 961 0.00000000 0.0000000000
## 962 0.00000000 0.0019575605
## 963 0.98706184 0.5140646908
## 964 0.97628365 0.0446983123
## 965 0.00000000 0.0000000000
## 966 0.00000000 0.0000000000
## 967 0.97730807 0.3831932988
## 968 0.98734720 0.3028066512
## 969 0.00000000 0.0000000000
## 970 0.00000000 0.0009833632
## 971 0.00000000 0.0000000000
## 972 0.00000000 0.0000000000
## 973 0.00000000 0.0000000000
## 974 0.95777264 0.0301540189
## 975 0.00000000 0.0000000000
## 976 0.00000000 0.0038989184
## 977 0.00000000 0.0000000000
## 978 0.00000000 0.0019696738
## 979 0.00000000 0.0029208507
## 980 0.98823183 0.6482383938
## 981 0.98649242 0.2184063384
## 982 0.00000000 0.0000000000
## 983 0.00000000 0.0000000000
## 984 0.00000000 0.0000000000
## 985 0.00000000 0.0000000000Temporal and spatial trend of MOI, eMOI, Rw
Chapter 5 - Allele frequency and heterozygoisty
Allele frequencies
## [1] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
## [38] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
## [75] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
## [112] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
## [149] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1## [1] "Mean of post_allele_freqs_mean 0.12094395280236"## # A tibble: 2 × 2
## sum n
## <dbl> <int>
## 1 1 7
## 2 1 157## # A tibble: 2 × 2
## sum n
## <dbl> <int>
## 1 1 6
## 2 1 158## Variable: post_allele_freqs_mean
## |-------------------------------------------------------------------------------------------------------|
## | Bins | Frequency | Cum Frequency | Percent | Cum Percent |
## |-------------------------------------------------------------------------------------------------------|
## | 0 - 0.1 | 957 | 957 | 70.58 | 70.58 |
## |-------------------------------------------------------------------------------------------------------|
## | 0.1 - 0.2 | 115 | 1072 | 8.48 | 79.06 |
## |-------------------------------------------------------------------------------------------------------|
## | 0.2 - 0.3 | 81 | 1153 | 5.97 | 85.03 |
## |-------------------------------------------------------------------------------------------------------|
## | 0.3 - 0.4 | 57 | 1210 | 4.2 | 89.23 |
## |-------------------------------------------------------------------------------------------------------|
## | 0.4 - 0.5 | 36 | 1246 | 2.65 | 91.89 |
## |-------------------------------------------------------------------------------------------------------|
## | 0.5 - 0.6 | 30 | 1276 | 2.21 | 94.1 |
## |-------------------------------------------------------------------------------------------------------|
## | 0.6 - 0.7 | 27 | 1303 | 1.99 | 96.09 |
## |-------------------------------------------------------------------------------------------------------|
## | 0.7 - 0.8 | 17 | 1320 | 1.25 | 97.35 |
## |-------------------------------------------------------------------------------------------------------|
## | 0.8 - 0.9 | 17 | 1337 | 1.25 | 98.6 |
## |-------------------------------------------------------------------------------------------------------|
## | 0.9 - 1 | 19 | 1356 | 1.4 | 100 |
## |-------------------------------------------------------------------------------------------------------|
## | Total | 1356 | - | 100.00 | - |
## |-------------------------------------------------------------------------------------------------------|Heterozygosity
## [1] "Median of post_HE_med 0.537055125963669"## [1] "Mean of post_HE_mean 0.500873106678471"## Min. 1st Qu. Median Mean 3rd Qu. Max.
## 0.0000 0.3663 0.5374 0.5009 0.6715 0.8778